托普迪亚:一个软件工具,用于自上而下的数据独立获取保护学.
Abdul Rehman Basharat1, Xingzhao Xiong2, Tian Xu3
1Department of BioHealth Informatics, Luddy School of Informatics, Computing, and Engineering, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202, USA.
bioRxiv : the preprint server for biology
|April 22, 2024
概括
顶向下数据独立采集质谱 (TD-DIA-MS) 显示出有望识别更多的蛋白质形式. 新的TopDIA软件工具使用TD-DIA-MS数据实现了可靠的蛋白形状识别,优于传统方法.
科学领域:
- 蛋白质组学是指蛋白质组学.
- 质谱测量质量谱测量
- 计算生物学 计算生物学
背景情况:
- 顶向下的质谱对于分析完整的蛋白质形态至关重要.
- 上向下依赖数据的采集质谱 (TD-DDA-MS) 是主要的方法,但上向下依赖数据的采集质谱 (TD-DIA-MS) 仍未得到充分探索.
- 尽管具有复杂的光谱,但TD-DIA-MS具有提高蛋白质形状识别的潜力.
结论:
- TD-DIA-MS代表了蛋白质形状分析的重大进步.
- 软件工具TopDIA使TD-DIA-MS用于蛋白形发现的使用变得民主化.
- 这种方法扩大了生物系统中蛋白质形状识别和表征的范围.
更多相关视频
12:11Simultaneous Affinity Enrichment of Two Post-Translational Modifications for Quantification and Site Localization
Published on: February 27, 2020
6.9K
10:37Deep Proteome Profiling by Isobaric Labeling, Extensive Liquid Chromatography, Mass Spectrometry, and Software-assisted Quantification
Published on: November 15, 2017
12.0K
相关概念视频
Peptide Identification Using Tandem Mass Spectrometry
6.4K
Tandem mass spectrometry, also known as MS/MS or MS2, is an analytical technique that employs two mass analyzers. Essentially it is a series of mass spectrometers that helps isolate a particular biomolecule and then helps study its chemical properties.
This technique helps gather information regarding the protein from which the peptide was obtained and to study the peptides’ amino acid sequence. Identifying peptides from a complex mixture is an important component of the growing field of...
This technique helps gather information regarding the protein from which the peptide was obtained and to study the peptides’ amino acid sequence. Identifying peptides from a complex mixture is an important component of the growing field of...
6.4K
Proteomics
7.3K
A proteome is the entire set of proteins that a cell type produces. We can study proteomes using the knowledge of genomes because genes code for mRNAs, and the mRNAs encode proteins. Although mRNA analysis is a step in the right direction, not all mRNAs are translated into proteins.
Proteomics is the study of proteomes' function. It involves the large-scale systematic study of the proteome to denote the protein complement expressed by a genome. Scientist Mark Wilkins coined the term...
Proteomics is the study of proteomes' function. It involves the large-scale systematic study of the proteome to denote the protein complement expressed by a genome. Scientist Mark Wilkins coined the term...
7.3K
