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相关概念视频

¹H NMR of Conformationally Flexible Molecules: Temporal Resolution00:52

¹H NMR of Conformationally Flexible Molecules: Temporal Resolution

834
At room temperature, the chair conformer of cyclohexane undergoes rapid ring flipping between two equivalent chair conformers at a rate of approximately 105 times per second. These two chair conformers are in equilibrium. The rapid ring flipping results in the interconversion of the axial proton to an equatorial proton and an equatorial to the axial proton. Such interconversions are too rapid and cannot be detected on the NMR timescale. Hence, the NMR spectrometer cannot distinguish between the...
834
Newman Projections02:06

Newman Projections

16.8K
Different notations are used to represent the three-dimensional structure of molecules on two-dimensional surfaces. One of the most commonly used representations is the dash-wedge formula. The dashed wedges, solid wedges, and the plane lines indicate the groups situated behind the plane, coming out of the plane, and in the plane, respectively.
The organic molecules rotate across the single bonds leading to numerous temporary three-dimensional structures of varying energy known as...
16.8K
Protein Organization01:13

Protein Organization

137.5K
Overview
137.5K
Protein Folding01:22

Protein Folding

118.0K
Overview
118.0K
RNA Structure01:19

RNA Structure

4.8K
The basic structure of RNA consists of a string of ribonucleotides attached by phosphodiester bonds. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA) involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three...
4.8K
¹H NMR of Conformationally Flexible Molecules: Variable-Temperature NMR01:15

¹H NMR of Conformationally Flexible Molecules: Variable-Temperature NMR

1.1K
The axial and equatorial protons in cyclohexane can be distinguished by performing a variable-temperature NMR experiment. In this process, except for one proton, the remaining eleven protons are replaced by deuterium. The deuterium substitution avoids the possible peak splitting caused by the spin-spin coupling between the adjacent protons. The remaining proton flips between the axial and equatorial positions.
1.1K

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相关实验视频

Updated: Jun 28, 2025

Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web
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Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web

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通过BASH MaP揭示的RNA三级结构和结构动态.

Maxim Oleynikov1, Samie R Jaffrey1

  • 1Department of Pharmacology, Weill Medical College, Cornell University, New York, NY, USA.

bioRxiv : the preprint server for biology
|April 22, 2024
PubMed
概括

我们开发了BASH MaP和DAGGER,以揭示隐藏的RNA三级结构和替代构造. 这种方法揭示了以前无法检测到的RNA结构,这对于理解RNA功能至关重要.

科学领域:

  • 分子生物学分子生物学
  • 结构生物学 结构生物学
  • 生物化学 生物化学

背景情况:

  • RNA分子折叠成复杂的三维三级结构,这决定了它们的功能.
  • 预测RNA三级结构和识别替代构造仍然是分子生物学中的一个重大挑战.

研究的目的:

  • 开发和验证一种用于识别替代RNA三级结构的新方法.
  • 为了研究RNA G-四复合体和菜合体的结构多样性和动态.

主要方法:

  • 开发BASH MaP (二甲基硫酸盐足迹) 以探测关键的三级结构调解者瓜诺辛N7的可访问性.
  • 将BASH MaP与DAGGER集成,这是一个计算管道,用于分析单分子足迹数据.
  • 应用BASH MaP和DAGGER在体外和细胞内研究RNA G-四重复合体,以及菜合体.

主要成果:

  • 在BASH MaP中,成功地确定了RNA G-四重复合体的多种构造状态和动态.
  • 对菜体的分析揭示了影响其光的替代三级构造.
  • 该研究表明,BASH MaP能够检测以前无法访问的RNA三级结构.

结论:

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  • 与DAGGER相结合的BASH MaP提供了一种强大的RNA结构分析方法.
  • 这种方法可以发现替代RNA的三级结构和形状异质性.
  • 了解RNA的结构动态对于阐明RNA的功能和调节至关重要.