基因本体学功能性注释数据集用于ITAG3.2和ITAG4.0番茄 (Solanum lycopersicum) 基因组注释
Ricardo Rivera-Silva1, Ricardo A Chávez Montes2, Fabiola Jaimes-Miranda3
1División de Biología Molecular, IPICYT, San Luis Potosí, 78216, Mexico.
Data in brief
|April 22, 2024
概括
研究人员为番茄 (Solanum lycopersicum) 开发了一种基因本体学功能注释,这是一个重要的模型生物. 该资源为科学界提供可靠的功能基因信息.
科学领域:
- 植物基因组学 植物基因组学
- 功能性基因组学是一种功能性基因组学.
- 生物信息学是一种生物信息学.
背景情况:
- 基因本体学 (GO) 提供结构化的功能基因知识.
- 像Arabidopsis thaliana这样的模型植物已经更新了GO注释.
- 番茄 (Solanum lycopersicum) 尽管进行了基因组测序,但缺乏可自由访问的GO功能注释.
研究的目的:
- 为番茄 (Solanum lycopersicum) 创建一个全面的基因本体学功能注释.
- 为番茄研究社区提供可靠和可访问的工具.
主要方法:
- 使用简化的玉米GAMER管道进行注释.
- 将管道应用于番茄 (Solanum lycopersicum) 基因组数据.
主要成果:
- 实现了72.42% (ITAG3.2) 和74.2% (ITAG4.0) 的蛋白质编码基因与GO术语关联.
- 为番茄生成了一个功能注释数据集.
结论:
- 开发的GO注释是番茄研究的可靠和用户友好的资源.
- 这有助于进一步对Solanum lycopersicum进行功能基因组学研究.
更多相关视频
10:40Comprehensive Workflow for the Genome-wide Identification and Expression Meta-analysis of the ATL E3 Ubiquitin Ligase Gene Family in Grapevine
Published on: December 22, 2017
10.5K
10:19Transcriptomic Analysis of C. elegans RNA Sequencing Data Through the Tuxedo Suite on the Galaxy Project
Published on: April 8, 2017
17.4K
相关概念视频
Genome Annotation and Assembly
18.8K
The genome refers to all of the genetic material in an organism. It can range from a few million base pairs in microbial cells to several billion base pairs in many eukaryotic organisms. Genome assembly refers to the process of taking the DNA sequencing data and putting it all back together in a correct order to create a close representation of the original genome. This is followed by the identification of functional elements on the newly assembled genome, a process called genome annotation.
18.8K
Genomics
36.3K
Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
36.3K
Gene Families
8.8K
Gene families consist of groups of genes proposed to have originated from a common ancestor. Typically these arise through events in which a gene or genes are mistakenly duplicated during cell division. Unlike their parent genes (which are subject to selection pressure to maintain function), these gene copies do not need to preserve their sequences and may evolve at a relatively faster rate.
Occasionally these regions can be adapted to take on new roles within the organism, becoming novel genes...
Occasionally these regions can be adapted to take on new roles within the organism, becoming novel genes...
8.8K
Tagging and Fusion Proteins
6.6K
Proteins are involved in several cellular processes and biochemical reactions. Analyzing a specific protein of interest requires it to be isolated from the other proteins in the cell. This is achieved by overexpressing the specific gene in a suitable host to produce large quantities of the target protein. A tag or label is recombined with the gene to produce a fusion protein containing the target protein and the tag. The tags on these fusion proteins can then be used for easy detection and...
6.6K
Evolutionary Relationships through Genome Comparisons
5.7K
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
5.7K
Organization of Genes
68.6K
Overview
68.6K
