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相关概念视频

Next-generation Sequencing03:00

Next-generation Sequencing

88.7K
The first human genome sequencing project cost $2.7 billion and was declared complete in 2003, after 15 years of international cooperation and collaboration between several research teams and funding agencies. Today, with the advent of next-generation sequencing technologies, the cost and time of sequencing a human genome have dropped over 100 fold.
Next-Generation Sequencing Methods
Although all next-generation methods use different technologies, they all share a set of standard features....
88.7K
Sanger Sequencing01:57

Sanger Sequencing

754.2K
DNA sequencing is a fundamental technique that is routinely used in the biological sciences. This method can be applied to a range of questions at different scales - from the sequencing of a cloned DNA fragment or the study of a mutation in a gene up to whole-genome sequencing. However, despite the widespread use of sequencing today, it was not until 1977 that Fredrick Sanger and his collaborators developed the chain-termination method to decode DNA sequences. It relies on the separation of a...
754.2K
RNA-seq03:21

RNA-seq

9.9K
RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while...
9.9K

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相关实验视频

Updated: Jun 28, 2025

Detection of Rare Mutations in CtDNA Using Next Generation Sequencing
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Detection of Rare Mutations in CtDNA Using Next Generation Sequencing

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ProSeq4:一个用户友好的多平台程序,用于准备和分析大规模的DNA多态数据集.

Dmitry A Filatov1

  • 1Department of Biology, University of Oxford, Oxford, UK.

Molecular ecology resources
|April 22, 2024
PubMed
概括

一个新的软件,proSeq4,简化了对进化遗传学的大型DNA多态数据集的处理. 这个工具帮助研究人员高效地分析基因组和转录基因组数据.

科学领域:

  • 进化遗传学的进化遗传学
  • 分子生态学分子生态学
  • 生物信息学是一种生物信息学.

背景情况:

  • 准备DNA多态数据集对于大规模的进化遗传研究至关重要但耗时.
  • 现有的软件选项对于高效处理成千上万个序列对齐是有限的.

研究的目的:

  • 引入"序列处理器v4" (proSeq4),这是一个多平台软件,旨在用户友好地准备和分析大规模序列多态数据集.
  • 为进化遗传学和分子生态学研究提供一个全面的工具,包括数据可视化和共同分析.

主要方法:

  • 开发具有图形用户界面 (GUI) 和命令行工具的多平台软件.
  • 实现对二十多种文件格式的支持,一个序列编辑器,数据可视化,质量控制和核心进化遗传分析.
  • 包括邻居结合 (NJ) 后代重建,DNA多态性分析和凝聚模拟.

主要成果:

  • proSeq4提供了一个用户友好的界面,用于处理和分析数千个基因组或转录基因组规模的数据集.
  • 该软件支持广泛的文件格式,包括用于数据准备,质量控制和进化遗传分析的基本工具.
  • 命令行工具有助于整合到现有的生物信息管道中,提高工作流的效率.

结论:

关键词:
DNA多形态的多态化凝聚聚合模拟的模拟.数据可视化数据可视化文件转换 文件转换人口遗传学 人口遗传学序列对齐编辑 编辑序列对齐软件 软件 软件 软件 软件

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Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease

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Last Updated: Jun 28, 2025

Detection of Rare Mutations in CtDNA Using Next Generation Sequencing
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Detection of Rare Mutations in CtDNA Using Next Generation Sequencing

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Detection of Rare Genomic Variants from Pooled Sequencing Using SPLINTER
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Detection of Rare Genomic Variants from Pooled Sequencing Using SPLINTER

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Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
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Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease

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  • proSeq4显著简化了大型DNA多态数据集的分析,有利于进化遗传学和分子生态学研究.
  • 该软件的多功能性和易用性使其对研究和教育目的都非常有价值,有助于说明进化过程.