时间回溯到酸盐结合基本功能的富含Gly原型
Zejun Zheng1, Alexander Goncearenco2, Igor N Berezovsky1,3
1Bioinformatics Institute, Agency for Science, Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, Singapore.
Current research in structural biology
|April 24, 2024
概括
这项研究重建了酸盐结合的古代起源,对于生命的开始至关重要. 确定了GxGxxG和GxxGxG等关键签名,揭示了核酸和二核酸结合的进化途径.
科学领域:
- 生物化学和分子进化
- 生命的起源研究研究生命的起源.
背景情况:
- 核酸结合是一种具有古老起源的基本生物过程.
- 酸盐结合是核酸含有连接体的功能中的关键组成部分.
- prebiot 的进化为基本的分子功能奠定了基础.
研究的目的:
- 审查和分析酸盐结合的结构,功能和进化方面.
- 以计算方式重建酸盐结合的最古老的序列原型.
- 为了识别和描述关键的酸盐结合特征.
主要方法:
- 关于益生菌进化和酸盐结合的文献综述.
- 计算实验重建古代序列原型.
- 对酸盐结合特征的位置特定评分矩阵 (PSSMs) 的导出.
- 分析签名之间的进化联系.
主要成果:
- 确定了两个主要的酸盐结合特征,GxGxxG和GxxGxG,区分核酸和二核酸联体.
- 与二核酸相关的签名 (GxGxxG) 看起来更通用,可以结合核酸酸盐.
- 重建的原型签名,GxGGxG,突出了甘氨酸在酸结合灵活性和相互作用中的作用.
结论:
- 这项研究阐明了酸盐结合的古代进化历史.
- 重建的原型揭示了早期分子识别的基本氨基酸要求.
- 甘氨酸,氨酸和氨酸残留物是酸盐结合功能的多样性和多样性的组成部分.
相关概念视频
Phosphorylation
50.3K
The addition or removal of phosphate groups from proteins is the most common chemical modification that regulates cellular processes. These modifications can affect the structure, activity, stability, and localization of proteins within cells as well as their interactions with other proteins.
During phosphorylation, protein kinases transfer the terminal phosphate group of ATP to specific amino acid side chains of substrate proteins. Serine, threonine, and tyrosine are the most commonly...
During phosphorylation, protein kinases transfer the terminal phosphate group of ATP to specific amino acid side chains of substrate proteins. Serine, threonine, and tyrosine are the most commonly...
50.3K
Protein Kinases and Phosphatases
13.1K
Proteins undergo chemical modifications that trigger changes in the charge, structure, and conformation of the proteins. Phosphorylation, acetylation, glycosylation, nitrosylation, ubiquitination, lipidation, methylation, and proteolysis are various protein modifications that regulate protein activity. Such modifications are usually enzyme-driven.
Protein kinases
Many proteins in the cell are regulated by phosphorylation, the addition of a phosphate group. A family of enzymes called kinases...
Protein kinases
Many proteins in the cell are regulated by phosphorylation, the addition of a phosphate group. A family of enzymes called kinases...
13.1K
ATP Energy Storage and Release
9.4K
ATP is a highly unstable molecule. Unless quickly used to perform work, ATP spontaneously dissociates into ADP and inorganic phosphate (Pi), and the free energy released during this process is lost as heat. The energy released by ATP hydrolysis is used to perform work inside the cell and depends on a strategy called energy coupling. Cells couple the exergonic reaction of ATP hydrolysis with endergonic reactions, allowing them to proceed.
One example of energy coupling using ATP involves a...
One example of energy coupling using ATP involves a...
9.4K
Phosphodiester Linkages
99.6K
Overview
Phosphodiester bond forms when a phosphoric acid molecule (H3PO4) links with two hydroxyl groups (–OH) of two other molecules, forming two ester bonds. Two water molecules are released in this process. The phosphodiester bond is commonly found in nucleic acids (DNA and RNA) and plays a critical role in their structure and function.
Phosphodiester Bonds Link Nucleotides Together
DNA and RNA are polynucleotides or long chains of nucleotides that are linked together. A nucleotide is...
Phosphodiester bond forms when a phosphoric acid molecule (H3PO4) links with two hydroxyl groups (–OH) of two other molecules, forming two ester bonds. Two water molecules are released in this process. The phosphodiester bond is commonly found in nucleic acids (DNA and RNA) and plays a critical role in their structure and function.
Phosphodiester Bonds Link Nucleotides Together
DNA and RNA are polynucleotides or long chains of nucleotides that are linked together. A nucleotide is...
99.6K
Allosteric Proteins-ATCase
5.7K
Binding sites linkages can regulate a protein's function. For example, enzyme activity is often regulated through a feedback mechanism where the end product of the biochemical process serves as an inhibitor.
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis...
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis...
5.7K
Phosphoinositides and PIPs
8.5K
Phosphoinositides are a group of phospholipids containing a glycerol backbone with two fatty acid chains and a phosphate attached to a myoinositol sugar ring. The inositol head group extends into the cytoplasm, where it is modified by adding phosphate groups to form phosphatidylinositol phosphates or PIPs.
Different phosphoinositides are synthesized and recruited on the cytosolic face of the plasma membrane. The localization of specific phosphoinositides concentrated in separate membrane...
Different phosphoinositides are synthesized and recruited on the cytosolic face of the plasma membrane. The localization of specific phosphoinositides concentrated in separate membrane...
8.5K


