基质符合性开关使P450中的立体选择性二分化成为可能NascB:从分子动力学模拟和量子力学/分子力学计算的洞察力
Tai-Ping Zhou1, Jianqiang Feng1, Yongchao Wang1
1State Key Laboratory of Physical Chemistry of Solid Surfaces and Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China.
P450 NascB酶使用基质动力学来精确的C-N和C-C键的形成在 (-) - naseseazine C合成. 基底基因的 conformational 切换是控制反应路径和立体选择性的关键.
科学领域:
- 生物化学 生物化学
- 酶学 是一种酶学.
- 计算化学计算化学
背景情况:
- 细胞染色体P450酶对于催化各种氧化反应至关重要.
- 了解P450 NascB的机制对于设计C-N二元化反应至关重要.
研究的目的:
- 为了阐明P450 NascB在 (-) - naseseazine C.合成中的催化机制.
- 调查基质动态在控制酶反应中的作用.
主要方法:
- 分子动力学 (MD) 模拟
- 量子力学/分子力学 (QM/MM) 的计算.
- 增强的采样技术.
主要成果:
- 最受青的机制涉及将原子转移到化合物I,随后是基质的激进形态转换.
- 一个 π-π 堆叠相互作用稳定了基底基因构造,促进了 C-C 键的形成.
- 铁超氧化物物种被发现对启动原子抽象无反应.
结论:
- P450 NascB通过基质动力学精确控制分子内C-N循环和分子间C-C合.
- 基质构造性切换降低了反应障碍,并决定了立体选择性,与实验数据保持一致.
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