贝叶斯对看不见的遗传变异的非参数估计的缩放过程priors
Federico Camerlenghi1,2,3, Stefano Favaro2,4, Lorenzo Masoero5
1Department of Economics, Management and Statistics, University of Milano-Bicocca, Milan, Italy.
Journal of the American Statistical Association
|May 8, 2024
概括
这项研究引入了一种新的贝叶斯非参数先验,稳定β缩放过程 (SB-SP),以改善生物数据中未见特征的估计. 与传统方法相比,SB-SP方法提供了更灵活,更准确的方法.
科学领域:
- 贝叶斯的非参数推理 贝叶斯的非参数推理
- 计算生物学 计算生物学
- 统计建模 统计建模
背景情况:
- 在生物应用中,估计看不见的特征至关重要.
- 在贝叶斯非参数 (BNP) 推断中,完全随机测量 (CRM) 给出了未见特征的波桑后面,独立于采样信息.
- 这种基于CRM的方法是一种简化,推断仅取决于先前的参数.
研究的目的:
- 引入稳定-Beta缩放过程 (SB-SP) 以提高未见特征估计.
- 证明SB-SP在保持分析可处理性的情况下丰富后部分布.
- 为了解决CRM先例在采集采样信息方面的局限性.
主要方法:
- 在此之前,开发和应用了稳定-Beta缩放过程 (SB-SP).
- 对未见特征数量的负二项后置分布的推导.
- 应用于合成数据集和真实癌症基因组数据.
主要成果:
- 之前的SB-SP结果是负的二项式后置分布.
- 这种后部分布包括样本大小和不同特征的数量.
- 估计是简单的,在抽样信息中是线性的,并且在计算上是高效的.
结论:
- 在估计准确度方面,SB-SP预先优于现有的参数和非参数竞争对手.
- 与之前的CRM相比,它为估计提供了更强大的覆盖范围.
- 拟议的BNP方法为未见特征估计提供了更强大和更有信息的方法.
相关概念视频
Genetic Variation
278
Genetic variation is the diversity in DNA sequences found among individuals of the same species. This diversity is crucial for a species' survival because it helps organisms adapt to environmental changes. Genetic variation begins with fertilization, where an egg and sperm cell merge. Each of these cells carries 23 chromosomes, up to 46 in the fertilized egg. Chromosomes are long DNA strands that contain genes, the basic units of heredity.
Genes exist in different versions called alleles,...
Genes exist in different versions called alleles,...
278
Genetic Drift
39.7K
Natural selection—probably the most well-known evolutionary mechanism—increases the prevalence of traits that enhance survival and reproduction. However, evolution does not merely propagate favorable traits, nor does it always benefit populations.
39.7K
Distributions to Estimate Population Parameter
4.1K
The accurate values of population parameters such as population proportion, population mean, and population standard deviation (or variance) are usually unknown. These are fixed values that can only be estimated from the data collected from the samples. The estimates of each of these parameters are sample proportion, the sample mean, and sample standard deviation (or variance). To obtain the values of these sample statistics, data are required that have particular distribution and central...
4.1K
Mutation, Gene Flow, and Genetic Drift
58.3K
In a population that is not at Hardy-Weinberg equilibrium, the frequency of alleles changes over time. Therefore, any deviations from the five conditions of Hardy-Weinberg equilibrium can alter the genetic variation of a given population. Conditions that change the genetic variability of a population include mutations, natural selection, non-random mating, gene flow, and genetic drift (small population size).
58.3K
Estimating Population Standard Deviation
3.0K
When the population standard deviation is unknown and the sample size is large, the sample standard deviation s is commonly used as a point estimate of σ. However, it can sometimes under or overestimate the population standard deviation. To overcome this drawback, confidence intervals are determined to estimate population parameters and eliminate any calculation bias accurately. However, this only applies to random samples from normally distributed populations. Knowing the sample mean and...
3.0K
Estimating Population Mean with Unknown Standard Deviation
7.7K
In practice, we rarely know the population standard deviation. In the past, when the sample size was large, this did not present a problem to statisticians. They used the sample standard deviation s as an estimate for σ and proceeded as before to calculate a confidence interval with close enough results. However, statisticians ran into problems when the sample size was small. A small sample size caused inaccuracies in the confidence interval.
William S. Gosset (1876–1937) of the...
William S. Gosset (1876–1937) of the...
7.7K


