相关实验视频
Updated: Jun 26, 2025

09:31
Calcium Carbonate Formation in the Presence of Biopolymeric Additives
Published on: May 14, 2019
16.7K
在水溶液中将酸盐物种与Ca2+和Mg2+结合
Basak Koca Fındık1, Majid Jafari2, Lin Frank Song3
1Department of Chemistry, Bogazici University, Bebek, Istanbul 34342, Turkey.
Journal of chemical theory and computation
|May 8, 2024
概括
我们改进了12-6-4莱纳德-斯 (LJ) 模型,以准确计算酸盐金属结合能. 这种改进的模型增强了对涉及离子和和等金属离子的关键生物相互作用的理解.
科学领域:
- 计算化学计算化学
- 生物物理学的生物物理.
- 材料科学 材料科学 材料科学
背景情况:
- 酸盐与金属的相互作用在生物系统中至关重要.
- 准确地描述这些相互作用对于理解生物功能至关重要.
- 标准计算模型需要精细化,以便精确的酸盐金属相互作用分析.
研究的目的:
- 通过使用12-6-4 LJ模型结合离子诱导双极相互作用来改进标准的12-6莱纳德-斯 (LJ) 电位.
- 准确确定酸盐离子 (H2PO4-,HPO4(2-),PO4(3-)) 与Ca(2+) 和Mg(2+) 的绝对结合自由能量.
- 微调LJ极化值,以提高模拟阴离子-离子相互作用的准确性.
主要方法:
- 利用了12-6-4莱纳德-斯 (LJ) 潜力模型,其中包括离子诱导的双极相互作用.
- 采用参数扫描来优化极化值.
- 应用热力学集成 (TI) 来计算酸离子的溶解自由能量.
- 使用潜在平均力 (PMF) 方法来确定金属酸盐相互作用的极化性.
主要成果:
- 修改的12-6-4 LJ参数准确地复制了酸离子溶解的自由能量.
- 获得的金属酸盐相互作用的极化值.
- 在较长的距离上观察到与Ca2+) 和Mg2+) 协调的酸盐离子的类似的自由能量概况.
- 发现绝对结合能值随着酸盐去质子化而增加.
结论:
- 12-6-4 LJ型非结合模型在描述阴离子-离子相互作用方面表现出灵活性和准确性.
- 改进后的模型提供了对酸盐与金属相互作用的更精确的描述.
- 这种更好的理解对于阐明酸盐金属接触在生物系统中的作用至关重要.
相关概念视频
Calmodulin-dependent Signaling
5.1K
Calmodulin (CaM) is a calcium-binding protein in eukaryotes that controls various calcium-regulated cellular processes. It has four calcium-binding sites that bind calcium to form the calcium-calmodulin ( Ca2+-CaM) complex. GPCR stimulation increases the calcium levels in the cells that bind to CaM and induces a conformational change.
The Ca2+-CaM complex does not have enzymatic activity by itself. Instead, the complex binds downstream target proteins, including membrane proteins or enzymes,...
The Ca2+-CaM complex does not have enzymatic activity by itself. Instead, the complex binds downstream target proteins, including membrane proteins or enzymes,...
5.1K
Phosphate Buffer
1.2K
The phosphate buffer system is a critical biological mechanism for maintaining pH stability in the body. This system operates primarily through two components: sodium dihydrogen phosphate (NaH2PO4), which acts as a weak acid, and sodium hydrogen phosphate (Na2HPO4), which serves as a weak base.
Sodium dihydrogen phosphate does not fully dissociate in neutral or acidic solutions. When a strong base, such as sodium hydroxide (NaOH), is introduced into the solution, sodium dihydrogen phosphate...
Sodium dihydrogen phosphate does not fully dissociate in neutral or acidic solutions. When a strong base, such as sodium hydroxide (NaOH), is introduced into the solution, sodium dihydrogen phosphate...
1.2K
Introduction to Electrolytes
10.2K
In humans, electrolytes play a vital role in various physiological processes. Balancing electrolyte levels is essential for normal body functions; their imbalance can be life-threatening. The major electrolytes include sodium, potassium, chloride, calcium, phosphate, and bicarbonate. They are primarily involved in physiological processes, such as nerve signal transmission, membrane trafficking, muscle contraction, buffering body fluids, and balancing water levels in the body.
Role of Sodium
One...
Role of Sodium
One...
10.2K
Factors Affecting Solubility
33.4K
Compared with pure water, the solubility of an ionic compound is less in aqueous solutions containing a common ion (one also produced by dissolution of the ionic compound). This is an example of a phenomenon known as the common ion effect, which is a consequence of the law of mass action that may be explained using Le Chȃtelier’s principle. Consider the dissolution of silver iodide:
33.4K
Complexation Equilibria: Overview
670
Complexation reactions take place when dative or coordinate covalent bonds form between metal ions and ligands. The compounds formed in these reactions are called coordination compounds. The number of bonds formed between the metal ion and the ligands is called its coordination number. Generally, most metal ions in an aqueous solution are solvated by water molecules and thus exist as aqua complexes.
The equilibrium constant of the complexation reaction is represented as the formation constant...
The equilibrium constant of the complexation reaction is represented as the formation constant...
670
Phosphorylation
50.3K
The addition or removal of phosphate groups from proteins is the most common chemical modification that regulates cellular processes. These modifications can affect the structure, activity, stability, and localization of proteins within cells as well as their interactions with other proteins.
During phosphorylation, protein kinases transfer the terminal phosphate group of ATP to specific amino acid side chains of substrate proteins. Serine, threonine, and tyrosine are the most commonly...
During phosphorylation, protein kinases transfer the terminal phosphate group of ATP to specific amino acid side chains of substrate proteins. Serine, threonine, and tyrosine are the most commonly...
50.3K

