在不同规模的猪中探索全基因组重组速率变化模式的探索
Zuoquan Chen1, Meng Zhou1, Yingchun Sun1
1National Key Laboratory for Swine Genetic Improvement and Germplasm Innovation, Jiangxi Agricultural University, Nanchang 330045, China.
Animals : an open access journal from MDPI
|May 11, 2024
概括
猪重组地图显示,在不同品种之间存在适度的保护,与品种起源相关的变化. 这项研究确定了重组热点,并表明PRDM9可能存在.
科学领域:
- 遗传学和基因组学 遗传学和基因组学
- 动物育种 动物育种
- 进化生物学 进化生物学
背景情况:
- 介质重组对于遗传多样性,品种选择和性繁殖生物的进化至关重要.
- 重组模式在不同猪品种之间和不同猪品种内部呈现出显著的变化.
研究的目的:
- 计算大规模种群重组率并构建猪的高分辨率历史重组图.
- 分析不同品种和分辨率的猪重组事件的变化.
- 调查PRDM9在调节猪重组热点中的作用.
主要方法:
- 使用约52K个SNP基因型在4个品种的3279头猪中计算出种群重组率.
- 使用来自非相关个体的1600万个SNP构建了一个高分辨率的历史重组地图.
- 进行了对重组图的比较分析,并研究了重组热点中PRDM9基因的丰富性.
主要成果:
- 同一性别的猪重组地图显示了不同品种的温和保护,西方和中国品种之间的相似性较低.
- 确定了3861个重组热点,历史和中性重组率之间具有中高水平的相关性.
- 重组热点位于远离基因转录起点的地方,PRDM9动机在热点中得到丰富,这表明其具有调节作用.
结论:
- 猪的重组模式在不同品种之间有所不同,为基因组选择育种提供了洞察力.
- 该研究强调了PRDM9在调节猪基因组重组中的潜在作用.
- 这项研究为了解猪基因组重组的分子机制奠定了基础.
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