相关实验视频
Updated: Jun 26, 2025

09:11
Assays for Validating Histone Acetyltransferase Inhibitors
Published on: August 6, 2020
6.5K
组合性希斯基因修改对ATAD2和ATAD2B基因对乙氨酸识别的影响
Margaret Phillips1,2, Kiera L Malone1, Brian W Boyle1
1Department of Pharmacology, Larner College of Medicine, University of Vermont, Burlington, Vermont 05405, United States.
Journal of medicinal chemistry
|May 11, 2024
概括
含有2 (ATAD2) 和ATAD2B蛋白质的ATPase家族AAA+域具有能够读取基因组修饰的体. ATAD2B基因组与ATAD2基因组不同,它与其他标记结合了乙化基因组.
科学领域:
- 生物化学 生物化学
- 分子生物学分子生物学
- 表观遗传学 在表观遗传学中,表观遗传学是指表观遗传学.
背景情况:
- 含有2 (ATAD2) 的ATPase家族AAA+域及其对应物ATAD2B蛋白质是表观遗传调节剂.
- 它们的C端基因组 (C-terminal bromodomains,简称BRD) 识别了基因组蛋白上的乙化氨酸残留物,从而影响了基因表达.
研究的目的:
- 调查ATAD2和ATAD2B基因对乙化氨酸残留物的结合选择性.
- 为了了解邻近的基因组后翻译修改如何影响这种识别.
- 为了阐明ATAD2/Bodomain-histone相互作用背后的结构机制.
主要方法:
- ATAD2和ATAD2B类动物的结构功能分析.
- 生物化学测试以评估与改性质素的结合.
- 进行X射线晶体学,以确定原体-连接体复合体的结构.
主要成果:
- ATAD2B 基体表现出更广泛的结合,容纳具有相邻甲基化或酸化标记的乙化组素配体.
- ATAD2基因的乙氨酸结合因相邻的修改而显著受损.
- 结构数据显示,在结合口袋内的ATAD2/B BRD残留物,受到邻近标记的影响,对乙氨酸的特定协调.
结论:
- 多种组织组织蛋白修饰的相互作用决定了ATAD2/Bodomains的结合特异性和结合方式.
- 这种差异性识别表明,ATAD2和ATAD2B在解释基质子代码方面有不同的作用.
相关概念视频
Histone Modification
13.3K
The histone proteins have a flexible N-terminal tail extending out from the nucleosome. These histone tails are often subjected to post-translational modifications such as acetylation, methylation, phosphorylation, and ubiquitination. Particular combinations of these modifications form “histone codes” that influence the chromatin folding and tissue-specific gene expression.
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone...
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone...
13.3K
Spreading of Chromatin Modifications
8.3K
The histone proteins in the nucleosomes are post-translationally modified (PTM) to increase or decrease access to DNA. The commonly observed PTMs are methylation, acetylation, phosphorylation, and ubiquitination of lysine amino acids in the histone H3 tail region. These histone modifications have specific meaning for the cell. Hence, they are called "histone code". The protein complex involved in histone modification is termed as "reader-writer" complex.
Writers
The writer...
Writers
The writer...
8.3K
The Nucleosome Core Particle
909
Nucleosomes are the DNA-histone complex, where the DNA strand is wound around the histone core. The histone core is an octamer containing two copies of H2A, H2B, H3, and H4 histone proteins.
Nucleosomes, paradoxically, perform two opposite functions simultaneously. On the one hand, their primary aim is to protect the delicate DNA strands from physical damage and help achieve a higher compaction ratio. On the other hand, they must allow polymerase enzymes to access histone-bound DNA during...
Nucleosomes, paradoxically, perform two opposite functions simultaneously. On the one hand, their primary aim is to protect the delicate DNA strands from physical damage and help achieve a higher compaction ratio. On the other hand, they must allow polymerase enzymes to access histone-bound DNA during...
909
Covalently Linked Protein Regulators
6.8K
Proteins can undergo many types of post-translational modifications, often in response to changes in their environment. These modifications play an important role in the function and stability of these proteins. Covalently linked molecules include functional groups, such as methyl, acetyl, and phosphate groups, and also small proteins, such as ubiquitin. There are around 200 different types of covalent regulators that have been identified.
These groups modify specific amino acids in a protein....
These groups modify specific amino acids in a protein....
6.8K
Nucleosome Remodeling
9.1K
Nucleosomes are the basic units of chromatin compaction. Each nucleosome consists of the DNA bound tightly around a histone core, which makes the DNA inaccessible to DNA binding proteins such as DNA polymerase and RNA polymerase. Hence, the fundamental problem is to ensure access to DNA when appropriate, despite the compact and protective chromatin structure.
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
9.1K
Histone Variants at the Centromere
4.3K
Histone variants are the histone proteins with structural and sequence variations. These variants may be regarded as “mutant” forms that replace their canonical histone counterparts in the nucleosomes. Specific post-translational modifications on the histone variants enable further chromatin complexity and regulate tissue-specific gene expression. The most common histone variants are from histone H2A, H2B, and linker histone H1 families. However, several variants of histone H3...
4.3K

