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Updated: Jun 26, 2025

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Hierarchical and Programmable One-Pot Oligosaccharide Synthesis
Published on: September 6, 2019
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在glycosylation和相关途径的in silico模拟
Yukie Akune-Taylor1, Akane Kon2, Kiyoko F Aoki-Kinoshita3,4,5
1Glycan and Life Systems Integration Center, Soka University, Tokyo, Japan.
Analytical and bioanalytical chemistry
|May 15, 2024
概括
对于生物识别至关重要的甘氨酸缺乏直接测序技术. 本综述探讨了用于预测甘氨酸结构和生物合成途径的in silico方法,有助于甘氨酸体的表征.
科学领域:
- 碳水化合物化学和系统生物学
- 葡萄糖化学品和生物信息学
背景情况:
- 甘氨酸在健康和疾病的生物识别中起着至关重要的作用.
- 目前甘氨酸测序技术的局限性阻碍了完整的表征.
- 甘氨酸的结构是高度可变的,并且不能在遗传上复制.
研究的目的:
- 审查可用的数据资源,以在基化途径的模拟.
- 描述用于分析糖化和甘氨酸生物合成的软件工具.
- 概述未来的研究方向在计算型糖组学.
主要方法:
- 在使用糖基因表达数据的糖化化途径的in silico预测.
- 含有系统生物学和生物处理技术的糖基化模拟.
- 酶性参数的分析,包括酶/基质度和动力学.
主要成果:
- 识别可用的数据资源,用于计算型糖基化研究.
- 现有软件工具的描述,用于模拟和分析糖甘路径.
- 通过计算建模来预测甘氨酸结构的可行性.
结论:
- 在 silico 方法提供了一个可行的方法来表征糖体.
- 系统生物学和生物处理的整合提高了预测准确性.
- 进一步开发计算工具对于推进糖性化学品研究至关重要.
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Protein glycosylation starts in the ER lumen and continues in the Golgi apparatus. Glycosyltransferases catalyze the addition of sugar molecules or glycosylation of proteins. Usually, these enzymes add sugars to the hydroxyl groups of selected serine or threonine residues to form O-linked glycans or the amino groups of asparagine residues to form N-linked glycans. Different positions on the same polypeptide chain can contain differently linked glycans.
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Glycosylation, the most common post-translational modification for proteins, serves diverse functions. Adding sugars to proteins makes the proteins more resistant to proteolytic digestion. Glycosylated proteins can act as markers and receptors to promote cell-cell adhesion. Additionally, they have many essential quality control functions in the cell, such as correct protein folding and facilitating transport of misfolded proteins to the cytosol, which can be degraded.
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