血液处理方案对血中无细胞DNA碎片组学的影响:一阶段和两阶段离心术的比较
Xintao Hu1, Haiqiang Zhang2, Yeqin Wang2
1Engineering Research Center of Text Computing & Cognitive Intelligence, Ministry of Education, Key Laboratory of Intelligent Medical Image Analysis and Precise Diagnosis of Guizhou Province, State Key Laboratory of Public Big Data, College of Computer Science and Technology, Guizhou University, Guiyang 550025, China; BGI Research, Shenzhen 518083, China.
概括
血无细胞DNA (cfDNA) 分析的一步离心法适用于核cfDNA,但会影响线粒体DNA (mtDNA). 这种方法简化了用于疾病监测的cfDNA碎片组学.
科学领域:
- 生物化学 生物化学
- 分子生物学分子生物学
- 基因组学就是基因组学.
背景情况:
- 无细胞DNA (cfDNA) 断片组学显示出对非侵入性疾病诊断的前景.
- 目前的方法通常使用两步离心,但其对cfDNA分析的影响尚不清楚.
研究的目的:
- 为了研究一阶段离心法与两阶段离心法对血cfDNA碎片体分析的影响.
- 确定用于cfDNA研究的最佳离心法.
主要方法:
- 血cfDNA是使用健康个体的一步和两步离心法准备的.
- 进行全基因组测序 (WGS) 来比较cfDNA碎片的特征.
- 从健康和COVID-19患者中重新分析之前处理的样本.
主要成果:
- 在离心法之间的核cfDNA大小,动图多样性或基因组分布方面没有发现显著差异.
- 与COVID-19相关的cfDNA尺寸缩短在两种方法中都是一致的.
- 与两步离心法相比,单步离心法产生了更高的丰度和更长的无细胞线粒体DNA (mtDNA),掩盖了特定疾病的信号.
结论:
- 一步低速离心是分析核cfDNA碎片化的可行方法.
- 该方法显著影响mtDNA分析,可能会混疾病特异性发现.
- 这些发现为cfDNA研究和临床应用提供了指导.
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