通过无域酶向的全球基因组挖掘,发现了真菌类类类类
1Department of Chemistry, City University of Hong Kong, Tat Chee Avenue, Kowloon, Hong Kong SAR, China.
Nature communications
|May 21, 2024
概括
一个新的真菌基因组挖掘工具通过检测"无域"酶来识别新的自然产品. 这种方法导致发现了独特的真菌化合物和酶,扩大了天然产品的探索.
科学领域:
- 生物化学 生物化学
- 基因组学就是基因组学.
- 自然产品的发现自然产品的发现
背景情况:
- 基因组学引导的发现已经推进了天然产品的识别.
- 一个关键的挑战是从庞大的基因组数据中选择性地提取新型化合物的生物合成基因集群 (BGC).
- 现有的生物信息工具往往错过了BGCs编码缺乏可检测的蛋白质域的酶.
研究的目的:
- 开发一种真菌基因组挖掘工具,用于识别编码"无域"酶的BGC.
- 在真菌中发现新的天然产品和生物合成途径.
- 扩大对未开发的自然产品的基因组开采的范围.
主要方法:
- 开发了一个真菌基因组挖掘工具,用无域酶提取BGC.
- 搜索了大约2000个真菌基因组,寻找Pyr4家族的烯环酶同类物.
- 描述了选择的BGC,并确定了新的化合物和酶.
主要成果:
- 发现了几种独特的真菌BGCs编码无域酶.
- 已识别出真菌的类三基和新型类合成酶.
- 发现了一种由Pyr4家族的烯环酶生物合成的新甲基化.
结论:
- 开发的基因组挖掘工具有效地识别了编码无域酶的BGC.
- 这种方法有助于发现以前无法获得的自然产品.
- 该工具为探索真菌生物多样性和发现新型化合物提供了一个有价值的平台.
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