遗传和基因组数据存档的最佳实践
Deborah M Leigh1, Amy G Vandergast2, Margaret E Hunter3
1Swiss Federal Research Institute WSL, Birmensdorf, Switzerland. deborah.leigh@wsl.ch.
Nature ecology & evolution
|May 24, 2024
概括
改善遗传数据存档对于科学进步至关重要. 让遗传和基因组数据集符合FAIR (可查找,可访问,可互操作,可重复使用) 的要求,将使更广泛的数据重复使用和发现成为可能.
科学领域:
- 基因组学就是基因组学.
- 生物信息学是一种生物信息学.
- 数据科学数据科学数据科学
背景情况:
- 遗传和基因组数据被收集用于各种科学和应用用途.
- 目前的数据存档实践没有标准化,阻碍了数据集的再利用,超出了生成作者.
- 缺乏上下文元数据进一步复杂化了档案遗传信息的可访问性和实用性.
研究的目的:
- 识别现有的遗传和基因组数据档案中的挑战.
- 为有效的遗传和基因组数据存档提出最佳实践建议.
- 突出机构和出版商在增强数据存档方面的作用.
主要方法:
- 审查当前的遗传和基因组数据存档实践.
- 分析导致有限数据重复使用的挑战.
- 在宏观遗传学背景下讨论FAIR数据原则 (可查找,可访问,可互操作,可重复使用).
主要成果:
- 遗传和基因组数据集的重复使用是不常见的,因为存档和元数据不好.
- 宏观遗传学领域展示了可访问,符合FAIR数据的潜力.
- 在生态学和进化学方面缺乏正式的数据管理培训有助于解决这个问题.
结论:
- 实施标准化存档实践和全面的元数据对于最大限度地提高遗传和基因组数据的价值至关重要.
- 研究机构和出版商必须采取积极措施,改善数据存档标准.
- 采用FAIR原则将通过提高数据可访问性和可重复使用性来开辟新的研究途径.
相关概念视频
Evolutionary Relationships through Genome Comparisons
5.7K
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
5.7K
Genomics
36.3K
Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
36.3K
Next-generation Sequencing
88.7K
The first human genome sequencing project cost $2.7 billion and was declared complete in 2003, after 15 years of international cooperation and collaboration between several research teams and funding agencies. Today, with the advent of next-generation sequencing technologies, the cost and time of sequencing a human genome have dropped over 100 fold.
Next-Generation Sequencing Methods
Although all next-generation methods use different technologies, they all share a set of standard features....
Next-Generation Sequencing Methods
Although all next-generation methods use different technologies, they all share a set of standard features....
88.7K


