一个染色体尺度的基因组组合的尼帕棕 hispid甲虫Octodonta nipae
Baozhen Tang1,2, Chuanlin Yin3, Kang He4
1State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Scientific data
|May 30, 2024
概括
为尼帕棕虫 (Octodonta nipae) 生成了一种新的高质量基因组组. 这个资源有助于理解入侵性昆虫.
科学领域:
- 基因组学就是基因组学.
- 昆虫学 昆虫学是一门学科.
- 侵入性物种 生物学 生物学
背景情况:
- 尼帕棕虫 (Octodonta nipae) 是一种侵入性昆虫,威胁着棕生产.
- 有限的基因组数据阻碍了对其侵入性特征和适应性的理解.
研究的目的:
- 为了生成一个高质量的染色体规模的基因组组装Octodonta nipae.
- 为研究甲虫的入侵性和生态学提供基础资源.
主要方法:
- 结合了Illumina短读,PacBio长读和Hi-C测序的组合.
- 基因组组装和注释. 基因组组装和注释.
主要成果:
- 一个1.31Gb的染色体规模的基因组组合,有九个染色体.
- 高连接 (1.022 Mb) 和脚手架 (148.6 Mb) N50值.
- 组装完整度为99.1%,具有16305个蛋白质编码基因和62.16%的重复序列.
结论:
- 高质量的基因组组装是Octodonta nipae研究的宝贵资源.
- 促进对导致侵袭性特征的遗传因素的理解.
- 支持制定有效的防治策略对这一害虫.
相关概念视频
Genome Annotation and Assembly
18.8K
The genome refers to all of the genetic material in an organism. It can range from a few million base pairs in microbial cells to several billion base pairs in many eukaryotic organisms. Genome assembly refers to the process of taking the DNA sequencing data and putting it all back together in a correct order to create a close representation of the original genome. This is followed by the identification of functional elements on the newly assembled genome, a process called genome annotation.
18.8K
Lampbrush Chromosomes
7.9K
In 1882, Flemming observed lampbrush chromosomes (LBC) in salamander eggs. Later in 1892, Rückert observed LBCs in shark egg cells and coined the term "lampbrush chromosomes" because they looked like brushes used to clean kerosene lamps.
LBCs are made up of two pairs of conjugating homologous chromatids. Each chromatid consists of alternatively positioned regions of condensed-inactive chromatin and loosely placed-active side loops, which can be contracted and extended. The loops...
LBCs are made up of two pairs of conjugating homologous chromatids. Each chromatid consists of alternatively positioned regions of condensed-inactive chromatin and loosely placed-active side loops, which can be contracted and extended. The loops...
7.9K
Polytene Chromosomes
10.0K
Polytene chromosomes are giant interphase chromosomes with several DNA strands placed side by side. They were discovered in the year 1881 by Balbiani in salivary glands, intestine, muscles, malpighian tubules, and hypoderm of larvae Chironomus plumosus. Hence, these are also called "Salivary gland chromosomes." These are found in insects of the order Diptera and Collembola; in certain organs of mammals; and synergids, antipodes of flowering plants. Polytene chromosomes are also...
10.0K
Evolutionary Relationships through Genome Comparisons
5.7K
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
5.7K


