活点环形状的变化与向新型酶活性过渡有关
Pauline Jacquet1, Raphaël Billot1, Amir Shimon2
1Gene&GreenTK, 19-21 Bd Jean Moulin, Marseille 13005, France.
JACS Au
|May 31, 2024
概括
酶的乱交使酶能够执行多种反应,驱动新的功能. 重新设计SsoPox乳酶活性部位显著增强了三活性,揭示了循环重组对功能至关重要.
科学领域:
- 生物化学 生物化学
- 酶学 是一种酶学.
- 结构生物学 结构生物学
背景情况:
- 酶的乱交是新酶功能的进化的一个关键因素.
- 酶活动之间的转变背后的分子机制尚未完全理解.
研究的目的:
- 研究酶活性过渡的分子机制.
- 为改变催化功能重新设计乳酶SsoPox的活性部位.
主要方法:
- 基于结构的设计和组合库被用来设计SsoPox变体.
- 确定工程变体的晶体结构,以分析活动部位的变化.
- 测量了对酸的催化活性,以评估功能转移.
主要成果:
- 与野生类型相比,工程变体显示了三催化剂的1000倍以上的改善.
- 突变显著改变了活性部位腔,主要是通过循环重新排列和形状变化.
- 一些变种完全丧失了原来的乳酶活性,这表明了显著的特异性转变.
结论:
- 活性位点循环配置对于乳酶活性至关重要.
- 符合性采样及其方向性可能在确定酶活性概况方面发挥作用.
- 通过基于结构的方法来重新设计酶可以有效调节酶功能和特异性.
相关概念视频
Enzymes
81.4K
Inside living organisms, enzymes act as catalysts for many biochemical reactions involved in cellular metabolism. The role of enzymes is to reduce the activation energies of biochemical reactions by forming complexes with its substrates. The lowering of activation energies favor an increase in the rates of biochemical reactions.
Enzyme deficiencies can often translate into life-threatening diseases. For example, a genetic abnormality resulting in the deficiency of the enzyme G6PD...
Enzyme deficiencies can often translate into life-threatening diseases. For example, a genetic abnormality resulting in the deficiency of the enzyme G6PD...
81.4K
Introduction to Mechanisms of Enzyme Catalysis
8.1K
For many years, scientists thought that enzyme-substrate binding took place in a simple "lock-and-key" fashion. This model stated that the enzyme and substrate fit together perfectly in one instantaneous step. However, current research supports a more refined view scientists call induced fit. The induced-fit model expands upon the lock-and-key model by describing a more dynamic interaction between enzyme and substrate. As the enzyme and substrate come together, their interaction causes...
8.1K
Induced-fit Model
80.7K
Most chemical reactions in cells require enzymes—biological catalysts that speed up the reaction without being consumed or permanently changed. They reduce the activation energy needed to convert the reactants into products. Enzymes are proteins, that usually work by binding to a substrate—a reactant molecule that they act upon.
Enzymes exhibit substrate specificity, meaning that they can only bind to certain substrates. This is mainly determined by the shape and chemical...
Enzymes exhibit substrate specificity, meaning that they can only bind to certain substrates. This is mainly determined by the shape and chemical...
80.7K
Allosteric Proteins-ATCase
5.7K
Binding sites linkages can regulate a protein's function. For example, enzyme activity is often regulated through a feedback mechanism where the end product of the biochemical process serves as an inhibitor.
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis...
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis...
5.7K
Allosteric Regulation
57.9K
Allosteric regulation of enzymes occurs when the binding of an effector molecule to a site that is different from the active site causes a change in the enzymatic activity. This alternate site is called an allosteric site, and an enzyme can contain more than one of these sites. Allosteric regulation can either be positive or negative, resulting in an increase or decrease in enzyme activity. Most enzymes that display allosteric regulation are metabolic enzymes involved in the degradation or...
57.9K
Cooperative Allosteric Transitions
7.9K
Cooperative allosteric transitions can occur in multimeric proteins, where each subunit of the protein has its own ligand-binding site. When a ligand binds to any of these subunits, it triggers a conformational change that affects the binding sites in the other subunits; this can change the affinity of the other sites for their respective ligands. The ability of the protein to change the shape of its binding site is attributed to the presence of a mix of flexible and stable segments in the...
7.9K


