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相关概念视频

Regulation of Expression at Multiple Steps01:23

Regulation of Expression at Multiple Steps

889
The gene expression in cells is regulated at different stages: (i) transcription, (ii) RNA processing, (iii) RNA localization, and (iv) translation. Transcriptional regulation is mediated by regulatory proteins such as transcription factors, activators, or repressors—these control gene expression by initiating or inhibiting the transcription of genes. Once a precursor or pre-mRNA is produced, it undergoes post-transcriptional modification, including 5' capping, splicing, and the...
889
Regulation of Expression Occurs at Multiple Steps02:24

Regulation of Expression Occurs at Multiple Steps

22.6K
Gene expression can be regulated at almost every step from gene to protein. Transcription is the step that is most commonly regulated. This involves the binding of proteins to short regulatory sequences on the DNA. This association can either promote or inhibit the transcription of a gene associated with the respective sequence.
Transcription results in the generation of precursor (pre-mRNA) that consists of both exons and introns, which needs further processing before being translated to a...
22.6K
Riboswitches01:56

Riboswitches

8.1K
Riboswitches are non-coding mRNA domains that regulate the transcription and translation of downstream genes without the help of proteins. Riboswitches bind directly to a metabolite and can form unique stem-loop or hairpin structures in response to the amount of the metabolite present. They have two distinct regions – a metabolite-binding aptamer and an expression platform.
The aptamer has high specificity for a particular metabolite which allows riboswitches to specifically regulate...
8.1K
What is Gene Expression?01:36

What is Gene Expression?

8.5K
A gene is a stretch of DNA that serves as the blueprint for functional RNAs and proteins. Since DNA is comprised  of nucleotides and proteins are comprised of amino acids, a mediator is required to convert the information encoded in DNA into proteins. This mediator is the messenger RNA (mRNA). mRNA copies the blueprint from DNA by a process called transcription. In eukaryotes, transcription occurs in the nucleus by complementary base-pairing with the DNA template. The mRNA is then...
8.5K
Master Transcription Regulators02:23

Master Transcription Regulators

6.9K
Master transcription regulators are regulatory proteins that are predominantly responsible for regulating the expression of multiple genes. Often these genes work in concert to drive a  complex process. Activation of a master transcription regulator can lead to a cascade of transcriptional activation necessary for that outcome. These regulators can directly bind to the regulatory sequences of the various genes involved, or they can indirectly regulate transcription by binding to regulatory...
6.9K
Alternative RNA Splicing02:18

Alternative RNA Splicing

21.1K
Alternative RNA splicing is the regulated splicing of exons and introns to produce different mature mRNAs from a single pre-mRNA. Unlike in constitutive splicing where a single gene produces a single type of mRNA, alternative splicing allows an organism to produce multiple proteins from a single gene and plays an important role in protein diversity.
There are five types of alternative RNA splicing that vary in the ways the pre-mRNA segments are removed or retained in the mature mRNA. The first...
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Updated: Jun 24, 2025

A Bioinformatics Pipeline to Accurately and Efficiently Analyze the MicroRNA Transcriptomes in Plants
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一个无参考算法发现了植物转录组中的调节.

Elisabeth Meyer1,2, Evan V Saldivar3,4, Marek Kokot5

  • 1Department of Biochemistry, Stanford University, Stanford, CA, 94305, USA.

bioRxiv : the preprint server for biology
|June 3, 2024
PubMed
概括
此摘要是机器生成的。

我们开发了SPLASH,这是一种分析植物基因调节而没有参考基因组的新算法. 这种方法揭示了对玉米花粉发育和种子生物学的新见解,揭示了以前未知的调节机制.

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科学领域:

  • 基因组学就是基因组学.
  • 分子生物学分子生物学
  • 生物信息学是一种生物信息学.

背景情况:

  • 了解植物基因组调节至关重要,但由于基因组数据不完整,因此具有挑战性.
  • 现有的方法通常依赖于参考基因组,限制了许多物种的分析.

研究的目的:

  • 介绍SPLASH,这是用于检测无基因组基因组序列变异的新算法.
  • 将SPLASH应用于RNA-seq数据,用于分析植物中的转录和转录后调节.

主要方法:

  • 利用SPLASH,这是一个新的算法,旨在对序列变异进行无基因组参考分析.
  • 应用SPLASH对来自玉米和阿拉比多普西斯的RNA测序数据.

主要成果:

  • 在玉米花粉发育过程中发现了差异性同源表达.
  • 在阿拉比多普西斯种子中确定了依赖沉浸的神秘拼接.
  • 证明了SPLASH能够检测来自混合亲属单基因型的基因差异调节的能力.

结论:

  • 在没有参考基因组的情况下,SPLASH可以发现新的植物调节机制.
  • 该算法有助于更深入地了解各种植物系统中的基因表达和调节.