核酸中介激活短质核细胞阿尔戈诺特人的免疫系统
Jithesh Kottur1,2, Radhika Malik3, Aneel K Aggarwal4
1Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA. jitheshkottur@iav.res.in.
Nature communications
|June 6, 2024
概括
研究人员阐明了细菌中SPARTA防御系统的结构. 这种 prokaryotic Argonaute (pAgo) 系统使用其 TIR 域进行 DNA 水解,并进行组装以进行流产性感染.
科学领域:
- 结构生物学是结构生物学.
- 细菌防御系统的分子机制
背景情况:
- 最近在细菌中发现了一种名为SPARTA的新型短质核阿尔戈诺特 (pAgo) 防御系统.
- 通过入侵DNA,SPARTA被激活,并利用其TIR域来化NAD(P) +.
研究的目的:
- 为了确定SPARTA系统的高分辨率结构.
- 阐明Sparta在细菌防御中的激活,组装和功能背后的分子机制.
主要方法:
- 使用X射线晶体学,获得了没有核酸的SPARTA异构体的结构.
- 使用冷电子显微镜 (cryo-EM) 来确定与指导RNA/目标ssDNA结合的SPARTA寡合体的结构.
主要成果:
- 晶体结构揭示了APAZ域与长PAGOS区域的等价性,以及在MID域中的独特插入.
- 化EM结构阐明了核酸结合的域重构,并确定了参与高阶组装的残留物.
- 观察TIR领域的并行链排列,对于催化是至关重要的.
结论:
- 该研究提供了对SPARTA的结构及其在核酸结合时的构造变化的原子层次见解.
- 这些发现揭示了SPARTA活性组合的基础及其在调解细菌中流产性感染中的作用.
相关概念视频
Experimental RNAi
6.1K
RNA interference (RNAi) is a cellular mechanism that inhibits gene expression by suppressing its transcription or activating the RNA degradation process. The mechanism was discovered by Andrew Fire and Craig Mello in 1998 in plants. Today, it is observed in almost all eukaryotes, including protozoa, flies, nematodes, insects, parasites, and mammals. This precise cellular mechanism of gene silencing has been developed into a technique that provides an efficient way to identify and determine the...
6.1K
RNA Interference
26.0K
RNA interference (RNAi) is a process in which a small non-coding RNA molecule blocks the post-transcriptional expression of a gene by binding to its messenger RNA (mRNA) and preventing the protein from being translated.
This process occurs naturally in cells, often through the activity of genomically-encoded microRNAs. Researchers can take advantage of this mechanism by introducing synthetic RNAs to deactivate specific genes for research or therapeutic purposes. For example, RNAi could be used...
This process occurs naturally in cells, often through the activity of genomically-encoded microRNAs. Researchers can take advantage of this mechanism by introducing synthetic RNAs to deactivate specific genes for research or therapeutic purposes. For example, RNAi could be used...
26.0K
Conservation of Protein Domains Over Different Proteins
10.8K
Protein domains are small structurally independent units that are part of a single amino acid chain. Although these domains are often structurally independent, they may rely on synergistic effects to perform their functions as part of a larger protein. Protein domains may be conserved within the same organism, as well as across different organisms.
A limited set of protein domains often duplicate and recombine during evolution. These domains can be organized in different combinations to...
A limited set of protein domains often duplicate and recombine during evolution. These domains can be organized in different combinations to...
10.8K
CRISPR and crRNAs
17.0K
Bacteria and archaea are susceptible to viral infections just like eukaryotes; therefore, they have developed a unique adaptive immune system to protect themselves. Clustered regularly interspaced short palindromic repeats and CRISPR-associated proteins (CRISPR-Cas) are present in more than 45% of known bacteria and 90% of known archaea.
The CRISPR-Cas system stores a copy of foreign DNA in the host genome and uses it to identify the foreign DNA upon reinfection. CRISPR-Cas has three different...
The CRISPR-Cas system stores a copy of foreign DNA in the host genome and uses it to identify the foreign DNA upon reinfection. CRISPR-Cas has three different...
17.0K
siRNA - Small Interfering RNAs
16.7K
Small interfering RNAs, or siRNAs, are short regulatory RNA molecules that can silence genes post-transcriptionally, as well as the transcriptional level in some cases. siRNAs are important for protecting cells against viral infections and silencing transposable genetic elements.
In the cytoplasm, siRNA is processed from a double-stranded RNA, which comes from either endogenous DNA transcription or exogenous sources like a virus. This double-stranded RNA is then cleaved by the...
In the cytoplasm, siRNA is processed from a double-stranded RNA, which comes from either endogenous DNA transcription or exogenous sources like a virus. This double-stranded RNA is then cleaved by the...
16.7K
piRNA - Piwi-interacting RNAs
6.8K
PIWI-interacting RNAs, or piRNAs, are the most abundant short non-coding RNAs. More than 20,000 genes have been found in humans that code for piRNAs while only 2000 genes have been found for miRNAs. piRNAs can act at the transcriptional and post-transcriptional levels and have a vital role in silencing transposable elements present in germ cells. They are also involved in epigenetic silencing and activation. Previously, they were thought to function only in germ cells but new evidence suggests...
6.8K


