图形神经网络具有多种功能,用于使用API和协同构造器的互动预测协同晶体
Medard Edmund Mswahili1, Kyuri Jo1, SeungDong Lee1
1Department of Computer Engineering, Chungbuk National University, Cheongju, 28644, South Korea.
Current medicinal chemistry
|June 7, 2024
概括
使用图形神经网络 (GNN) 简化了预测制药共晶形成的过程. 我们的GNN方法,特别是RGCN,与传统方法相比,显著提高了预测准确性,加速了药物开发.
科学领域:
- 制药科学 制药科学
- 计算化学计算化学
- 材料科学 材料科学 材料科学
背景情况:
- 活性药物成分 (API) 越来越多地被探索它们的固体剂型.
- 制药共晶为药物物质开发提供了一个有吸引力的途径,以FDA批准为指导.
- 确定适合API共晶形成的共同形成剂是一个重大挑战.
研究的目的:
- 开发和实施图形神经网络 (GNN),用于预测API-coformer共晶形成.
- 将GNN的性能与传统的描述器模型进行比较.
- 为了引入一个新的API-coformers关系图数据集.
主要方法:
- 实现图形卷积网络 (GCN),图形SAGE和关系图形卷积网络 (RGCN).
- 使用新推出的API-coformers关系图数据集进行培训和验证.
- 与随机森林,支持矢量机,极端梯度增强和人工神经网络相比,GNN性能进行了比较.
主要成果:
- 所有实施的GNN模型都显示出高预测准确度:GCN (91.36%),GraphSAGE (94.60%),和RGCN (95.95%).
- 通过有效地捕捉API和辅助器之间的复杂交互和关系,RGCN的表现优于其他模型.
- 模型熟练地学习了图形数据固有的拓结构.
结论:
- GNN提供了一种强大而高效的方法来预测制药共晶的形成.
- 由于其能够建模复杂的关系,这对于共晶预测至关重要,RGCN特别有前途.
- 这种计算策略可以通过优化辅助器查来加速药物发现和开发过程.
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