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相关概念视频

DNA as a Genetic Template02:05

DNA as a Genetic Template

21.9K
Two structural features of the DNA molecule provide a basis for the mechanisms of heredity: the four nucleotide bases and its double-stranded nature. The Watson-Crick model of double-helical DNA structure, proposed in 1952, drew heavily upon the X-ray crystallography work of researchers Rosalind Franklin and Maurice Wilkins. Watson, Crick, and Wilkins jointly received the Nobel Prize in Physiology or Medicine for their work in 1962. Franklin was, controversially, excluded from the prize for...
21.9K
Nucleic Acid Structure01:25

Nucleic Acid Structure

6.1K
The pentose sugar in DNA is deoxyribose, while in RNA the pentose sugar is ribose. The difference between the sugars is the presence of the hydroxyl group on the ribose's second carbon and a hydrogen on the deoxyribose's second carbon. The phosphate residue attaches to the hydroxyl group of the 5′ carbon of one sugar and the hydroxyl group of the 3′ carbon of the sugar of the next nucleotide, which forms  a 5′ to 3′ phosphodiester linkage.
DNA Structure
DNA...
6.1K
Structure of a Gene01:30

Structure of a Gene

12.5K
A gene is the fundamental unit of heredity. Every individual has two copies of each gene, one inherited from each parent. Although most people contain the same genes, there is a small fraction that is slightly different amongst people. A gene with a small difference in its sequence of DNA bases forms different alleles, contributing to different phenotypes.
However, only 1% of the DNA is composed of genes that encode proteins; the rest, 99% is non-coding DNA. This non-coding DNA performs...
12.5K
DNA-only Transposons02:57

DNA-only Transposons

14.4K
DNA-only transposons are called autonomous transposons since they code for the enzyme transposase that is required for the transposition mechanism. Insertion of transposons can alter gene functions in multiple ways. They can mutate the gene, alter gene expression by introducing a novel promoter or insulator sequence, introduce new splice sites, and change the mRNA transcripts produced, or remodel chromatin structure.
The donor site from where the transposon is excised is either degraded or...
14.4K
DNA Base Pairing02:27

DNA Base Pairing

27.3K
Erwin Chargaff’s rules on DNA equivalence paved the way for the discovery of base pairing in DNA. Chargaff’s rules state that in a double-stranded DNA molecule,
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DNA Microarrays02:34

DNA Microarrays

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Microarrays are high-throughput and relatively inexpensive assays that can be automated to analyze large quantities of data at a time. They are used in genome-wide studies to compare gene or protein expression under two varied conditions, such as healthy and diseased states. Microarrays consist of glass or silica slides on which probe molecules are covalently attached through surface functionalization. Most commonly, the slides are prepared through the chemisorption of silanes to silica...
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相关实验视频

Updated: Jun 24, 2025

Prediction and Validation of Gene Regulatory Elements Activated During Retinoic Acid Induced Embryonic Stem Cell Differentiation
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Prediction and Validation of Gene Regulatory Elements Activated During Retinoic Acid Induced Embryonic Stem Cell Differentiation

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基于核酸位置感知特征编码的DNA增强器预测的深度学习模型.

Wenxing Hu1, Yelin Li1, Yan Wu1

  • 1College of Physics and Electronic Information, Gannan Normal University, Ganzhou 341000, Jiangxi, China.

iScience
|June 13, 2024
PubMed
概括
此摘要是机器生成的。

本研究介绍了PDCNN模型用于预测DNA增强剂,通过提取隐藏的核酸特征来提高准确性. 深度学习方法的准确性超过95%,超过了基因组学和生物学中的现有方法.

关键词:
生物信息学是一种生物信息学.遗传学 是一个遗传学.

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Author Spotlight: An Integrated Workflow to Study the Promoter-Centric Spatio-Temporal Genome Architecture in Scarce Cell Populations
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Dissection of Enhancer Function Using Multiplex CRISPR-based Enhancer Interference in Cell Lines
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Dissection of Enhancer Function Using Multiplex CRISPR-based Enhancer Interference in Cell Lines

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相关实验视频

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Prediction and Validation of Gene Regulatory Elements Activated During Retinoic Acid Induced Embryonic Stem Cell Differentiation
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Author Spotlight: An Integrated Workflow to Study the Promoter-Centric Spatio-Temporal Genome Architecture in Scarce Cell Populations
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Dissection of Enhancer Function Using Multiplex CRISPR-based Enhancer Interference in Cell Lines
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科学领域:

  • 基因组学就是基因组学.
  • 计算生物学 计算生物学
  • 生物信息学是一种生物信息学.

背景情况:

  • 基因组DNA增强剂调节基因表达,对细胞功能至关重要.
  • 现有的用于增强器预测的机器学习模型往往错过了关键的序列特征,限制了准确性.

研究的目的:

  • 提出PDCNN模型,一种深度学习方法,用于准确的DNA增强器预测.
  • 解决目前预测方法中隐藏序列特征的不足利用问题.

主要方法:

  • PDCNN使用统计核酸表示和位置分布信息.
  • 使用一个卷积神经网络,具有双卷积和完全连接的层.
  • 交叉损失和梯度下降优化模型,具有微调的参数.

主要成果:

  • 该PDCNN模型在DNA增强器预测中达到95%以上的准确性.
  • 与传统和现有模型相比,显示出强大的特征提取能力.
  • 在识别DNA增强剂方面优于先进的机器学习方法.

结论:

  • PDCNN为DNA增强器预测提供了一种有效的深度学习方法.
  • 该模型的高级特征提取提高了准确性,并对生物和医学研究产生了广泛的影响.