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相关概念视频

Replicative Cell Senescence02:15

Replicative Cell Senescence

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Replicative cell senescence is a property of cells that allows them to divide a finite number of times throughout the organism's lifespan while preventing excessive proliferation. Replicative senescence is associated with the gradual loss of the telomere — short, repetitive DNA sequences found at the end of the chromosomes. Telomeres are bound by a group of proteins to form a protective cap on the ends of chromosomes. Embryonic stem cells express telomerase — an enzyme that adds...
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Maintenance of the ES Cell State01:14

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The cells of the blastocyst inner cell mass only remain pluripotent for a short time. This state of pluripotency and self-renewal can be maintained in embryonic stem (ES) cell culture by adding specific chemicals or growth factors to ensure the cells can continue dividing and later differentiate into different cell types. In some cases, the cells are grown on a feeder layer of differentiated cells, which provides the growth factors and extracellular matrix components necessary for stem cell...
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Non-equilibrium in the Cell01:16

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An important concept in studying metabolism and energy is that of chemical equilibrium. Most chemical reactions are reversible. They can proceed in both directions, releasing energy into their environment in one direction, and absorbing it from the environment in the other direction. The same is true for the chemical reactions involved in cell metabolism, such as the breaking down and building up of proteins into and from individual amino acids, respectively. Reactants within a closed system...
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The Cell Cycle Control System02:11

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The cell cycle is an organized set of events that leads the cell to divide into two daughter cells, each containing chromosomes identical to the parent cell. It is the cell cycle that leads to the formation of an entire organism from a single-cell zygote. Besides, cell division also functions in the renewal or repair of tissues in adult multicellular eukaryotes. For example, in the bone marrow, the stem cells divide to form new blood cells. Although essential for several functions, cell...
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Cell Signaling Feedback Loops01:07

Cell Signaling Feedback Loops

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Positive and negative feedback loops are crucial for regulating biological signaling systems. These feedback loops are processes that connect output signals to their inputs.
Negative feedback loops
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Output limiter
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The ability of induced pluripotent stem cells or iPSCs to differentiate into most body cell types has stimulated repair and regenerative medicine research over the past few decades. iPSC-derived blood cells, hepatocytes, beta islet cells, cardiomyocytes, neurons, and other cell types can repair injuries or regenerate damaged tissue in diseases such as diabetes and neurodegenerative disorders.
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相关实验视频

Updated: Jun 23, 2025

A Versatile Automated Platform for Micro-scale Cell Stimulation Experiments
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一SC:一个用于回顾细胞状态转换的计算平台.

Da Peng1, Patrick Cahan1,2,3

  • 1Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland, 21205, USA.

bioRxiv : the preprint server for biology
|June 19, 2024
PubMed
概括

使用转录因子网络,OneSC模拟合成细胞以建模发育轨迹. 这种计算工具准确地预测了细胞命运的变化,使得在发育和癌症生物学研究中更快地进行了体实验.

科学领域:

  • 发展生物学 发展生物学
  • 计算生物学 计算生物学
  • 系统生物学 系统生物学

背景情况:

  • 细胞状态转换的计算建模对于理解发育生物学,癌症生物学和细胞命运工程至关重要.
  • 单细胞RNA测序 (scRNA-seq) 在转变过程中提供了细胞状态的高分辨率时间快照.
  • 现有的方法往往难以忠实地模仿生物细胞状态过渡和稳定状态.

研究的目的:

  • 介绍OneSC,这是一个用于模拟跨发育轨迹的合成细胞的新平台.
  • 开发基于随机微分方程和核心转录因子 (TF) 监管网络的计算模型.
  • 为了生成精确复制细胞状态转换和稳定状态的布尔网络.

主要方法:

  • OneSC使用由核心TF监管网络管理的随机微分方程系统.
  • 该平台将生成布尔网络作为忠实细胞状态过渡和稳定状态模拟的优先事项.
  • 应用于小鼠骨髓原体scRNA-seq数据,以推断一个核心TF网络.

主要成果:

  • 使用推断网络进行的动态模拟准确地回顾了四个髓状细胞分化轨迹.
  • 生成合成单细胞表达特征,模仿分化的细胞状态 (红细胞,大细胞,粒细胞,单细胞).
  • 核心网络的in silico扰动准确地预测了TF扰动诱导的细胞命运偏差.

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结论:

  • 一个SC提供了一个强大的工具,用于模拟细胞状态转换和发育轨迹的in silico模拟.
  • 该平台预测TF扰动效应的能力为实验设计提供了宝贵的见解.
  • OneSC通过快速,经济高效的扰动实验来推进发育和癌症生物学中的计算方法.