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相关概念视频

Ribosome Profiling02:24

Ribosome Profiling

3.5K
Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
3.5K
X-ray Diffraction of Biological Samples01:10

X-ray Diffraction of Biological Samples

3.8K
X-ray diffraction or XRD is an analytical tool that utilizes X-rays to study ordered structures such as crystalline organic and inorganic samples, polycrystalline materials, proteins, carbohydrates, and drugs.
According to Bragg's law, when X-rays strike the sample positioned on a stage, the rays are  scattered by the electron clouds around the sample atoms. The  X-ray diffraction or scattering is caused by constructive interference of the X-ray waves that reflect off the internal...
3.8K
Protein Folding Quality Check in the RER01:29

Protein Folding Quality Check in the RER

3.7K
ER is the primary site for the maturation and folding of soluble and transmembrane secretory proteins. The calnexin cycle is a specific chaperone system that folds and assesses the confirmation of N-glycosylated proteins before they can exit the ER lumen. The primary players of this quality check pipeline are the lectins, ER-resident chaperones, and a glucosyl transferase enzyme. In case the calnexin system in the lumen fails to salvage a misfolded protein, it is transported to the cytoplasm...
3.7K
Ribosomal RNA Synthesis02:53

Ribosomal RNA Synthesis

13.2K
Ribosome synthesis is a highly complex and coordinated process involving more than 200 assembly factors. The synthesis and processing of ribosomal components occurs not only in the nucleolus but also in the nucleoplasm and the cytoplasm of eukaryotic cells.
Ribosome biogenesis begins with the synthesis of 5S and 45S pre-rRNAs by distinct RNA polymerases. The primary transcripts are extensively processed and modified before they are bound and folded by ribosomal proteins and assembly factors,...
13.2K
RNA-seq03:21

RNA-seq

9.9K
RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while...
9.9K
Proteomics01:33

Proteomics

7.3K
A proteome is the entire set of proteins that a cell type produces. We can study proteomes using the knowledge of genomes because genes code for mRNAs, and the mRNAs encode proteins. Although mRNA analysis is a step in the right direction, not all mRNAs are translated into proteins.
Proteomics is the study of proteomes' function. It involves the large-scale systematic study of the proteome to denote the protein complement expressed by a genome. Scientist Mark Wilkins coined the term...
7.3K

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相关实验视频

Updated: Jun 23, 2025

De novo Identification of Actively Translated Open Reading Frames with Ribosome Profiling Data
08:23

De novo Identification of Actively Translated Open Reading Frames with Ribosome Profiling Data

Published on: February 18, 2022

3.5K

RiboGraph:一个交互式可视化系统,用于读长度分辨率的核糖体分析数据.

Jonathan Chacko1, Hakan Ozadam1, Can Cenik1

  • 1Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, United States.

Bioinformatics (Oxford, England)
|June 19, 2024
PubMed
概括
此摘要是机器生成的。

RiboGraph为核糖体分析数据提供高效的实时可视化,克服了核酸水平分析的挑战. 这个工具简化了研究人员复杂的核糖体占用数据可视化.

更多相关视频

RIBO-seq in Bacteria: a Sample Collection and Library Preparation Protocol for NGS Sequencing
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RIBO-seq in Bacteria: a Sample Collection and Library Preparation Protocol for NGS Sequencing

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Global Identification of Co-Translational Interaction Networks by Selective Ribosome Profiling
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Global Identification of Co-Translational Interaction Networks by Selective Ribosome Profiling

Published on: October 7, 2021

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相关实验视频

Last Updated: Jun 23, 2025

De novo Identification of Actively Translated Open Reading Frames with Ribosome Profiling Data
08:23

De novo Identification of Actively Translated Open Reading Frames with Ribosome Profiling Data

Published on: February 18, 2022

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RIBO-seq in Bacteria: a Sample Collection and Library Preparation Protocol for NGS Sequencing
12:05

RIBO-seq in Bacteria: a Sample Collection and Library Preparation Protocol for NGS Sequencing

Published on: August 7, 2021

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Global Identification of Co-Translational Interaction Networks by Selective Ribosome Profiling
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Global Identification of Co-Translational Interaction Networks by Selective Ribosome Profiling

Published on: October 7, 2021

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科学领域:

  • 分子生物学分子生物学
  • 生物信息学是一种生物信息学.
  • 基因组学就是基因组学.

背景情况:

  • 在核酸分辨率下测量核酸占用率的过程中,核酸剖析非常重要.
  • 分析核糖体分析数据由于其高分辨率而带来了显著的可视化和分析挑战.
  • 现有的工具往往需要大量的对齐文件和大量的预处理,这阻碍了有效的分析.

研究的目的:

  • 介绍RiboGraph,一种新的可视化工具,专门设计用于核糖体分析数据.
  • 为分析核酸分辨率上的核糖体占用量提供一种高效和交互式的解决方案.
  • 为了简化可视化过程,使核糖体保护碎片的全面视觉分析.

主要方法:

  • 开发RiboGraph,一个专门的可视化工具.
  • 采用专用和高效的 .ribo 文件格式用于紧的数据存储.
  • 实现交互式实时可视化功能,以核糖体保护片段长度分辨率实现.

主要成果:

  • RiboGraph 在专门设计的紧文件类型上运行,大大减少了预处理时间和数据大小.
  • 该工具可实现对核糖体占用数据的交互式实时可视化.
  • RiboGraph提供了一个综合工具集,用于全面的视觉分析,赋予研究人员权力.

结论:

  • RiboGraph解决了可视化核酸分辨率核糖体分析数据的挑战.
  • 该工具的效率和交互功能有助于更深入地了解核糖体占用情况.
  • RiboGraph 在 GitHub 上随时可用,包含全面的文档和教程.