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相关概念视频

Conservative Site-specific Recombination and Phase Variation02:53

Conservative Site-specific Recombination and Phase Variation

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Because the DNA segments are cut and reorganized in a direction-specific manner, site-specific recombination has emerged as an efficient genetic engineering technique. Flippase and Cyclization recombinases or Flp and Cre, respectively, are two members of the tyrosine recombinase family derived from bacteriophages, that are used to mediate site-specific DNA insertions, deletions, and targeted expression of proteins in mammalian cell lines.
The recognition sites for Cre recombinase called LoxP...
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Homologous Recombination02:31

Homologous Recombination

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The basic reaction of homologous recombination (HR) involves two chromatids that contain DNA sequences sharing a significant stretch of identity. One of these sequences uses a strand from another as a template to synthesize DNA in an enzyme-catalyzed reaction. The final product is a novel amalgamation of the two substrates. To ensure an accurate recombination of sequences, HR is restricted to the S and G2 phases of the cell cycle. At these stages, the DNA has been replicated already and the...
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Crossing Over01:30

Crossing Over

4.3K
Crossing over is the exchange of genetic information between homologous chromosomes during prophase I of meiosis I. Genetic recombination gives rise to allelic diversity in the newly formed daughter cells. In humans, crossing over produces genetically distinct haploid egg and sperm cells that undergo fertilization to produce unique offspring. Before cell division starts, the germ cell’s chromosome(s) undergo duplication in the S phase of the cell cycle. As the cells enter prophase I,...
4.3K
Fixing Double-strand Breaks02:04

Fixing Double-strand Breaks

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The double-stranded structure of DNA has two major advantages. First, it serves as a safe repository of genetic information where one strand serves as the back-up in case the other strand is damaged. Second, the double-helical structure can be wrapped around proteins called histones to form nucleosomes, which can then be tightly wound to form chromosomes. This way, DNA chains up to 2 inches long can be contained within microscopic structures in a cell. A double-stranded break not only damages...
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相关实验视频

Updated: Jun 23, 2025

Amplification, Next-generation Sequencing, and Genomic DNA Mapping of Retroviral Integration Sites
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Amplification, Next-generation Sequencing, and Genomic DNA Mapping of Retroviral Integration Sites

Published on: March 22, 2016

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探索用于定位再组合断点的算法的精度和极限.

Shi Cen1, David A Rasmussen1,2

  • 1Bioinformatics Research Center, North Carolina State University, Raleigh, NC, USA.

Molecular biology and evolution
|June 25, 2024
PubMed
概括

重组检测方法在定位断点的准确性上有所不同. 信息网站的数量是准确的断点映射的关键,改善了家族遗传学重建.

科学领域:

  • 进化生物学是进化的生物学.
  • 基因组学就是基因组学.
  • 生物信息学是一种生物信息学.

背景情况:

  • 遗传学方法重建进化关系,但受到重组的阻碍.
  • 重组掩盖了祖先的遗传,需要检测断点和对齐选择.

研究的目的:

  • 评估重组检测方法在定位断点方面的准确性.
  • 确定影响断点检测精度的因素.

主要方法:

  • 模拟基因组序列使用祖先重组图.
  • 评估了MaxChi,3SEQ和基因算法重组检测用于断点位置的准确性.

主要成果:

  • 有信息的网站显著影响断点检测的准确性.
  • 使用检测到的断点来划分对齐,可以减少家族遗传错误.
  • 断点选择策略对遗传遗传重建质量的影响最小.

结论:

  • 基因组特征,特别是信息网站,会影响复合检测的性能.
  • 植物遗传学的最佳实践包括使用从准确的断点检测中获得的无重组对齐.
关键词:
祖先的重组图表可以显示出祖先重组图.断点定位定位 断点定位有关信息的网站.构系重建的重建.重组检测检测复合的检测

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Identification of Homologous Recombination Events in Mouse Embryonic Stem Cells Using Southern Blotting and Polymerase Chain Reaction
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