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相关概念视频

DNA Microarrays02:34

DNA Microarrays

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Microarrays are high-throughput and relatively inexpensive assays that can be automated to analyze large quantities of data at a time. They are used in genome-wide studies to compare gene or protein expression under two varied conditions, such as healthy and diseased states. Microarrays consist of glass or silica slides on which probe molecules are covalently attached through surface functionalization. Most commonly, the slides are prepared through the chemisorption of silanes to silica...
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Next-generation Sequencing

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The first human genome sequencing project cost $2.7 billion and was declared complete in 2003, after 15 years of international cooperation and collaboration between several research teams and funding agencies. Today, with the advent of next-generation sequencing technologies, the cost and time of sequencing a human genome have dropped over 100 fold.
Next-Generation Sequencing Methods
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X-ray Diffraction of Biological Samples

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X-ray diffraction or XRD is an analytical tool that utilizes X-rays to study ordered structures such as crystalline organic and inorganic samples, polycrystalline materials, proteins, carbohydrates, and drugs.
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Imaging Biological Samples with Optical Microscopy01:18

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Optical microscopy uses optic principles to provide detailed images of samples. Antonie van Leeuwenhoek designed the first compound optical microscope in the 17th century to visualize blood cells, bacteria, and yeast cells. In 1830, Joseph Jackson Lister created an essentially modern light microscope. The 20th century saw the development of microscopes with enhanced magnification and resolution.
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Super-resolution Fluorescence Microscopy01:37

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Super-resolution fluorescence microscopy (SRFM) provides a better resolution than conventional fluorescence microscopy by reducing the point spread function (PSF). PSF is the light intensity distribution from a point that causes it to appear blurred. Due to PSF, each fluorescing point appears bigger than its actual size, and it is the PSF interference of nearby fluorophores that causes the blurred image. Various approaches to achieving higher resolution through SRFM have recently been...
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Three-dimensional imaging techniques are essential in cell biology, allowing researchers to visualize intricate cellular structures with high resolution. Two prominent methods, Differential Interference Contrast Microscopy (DIC) and Confocal Scanning Laser Microscopy (CSLM), provide distinct advantages for imaging live and thick specimens, respectively.Differential Interference Contrast MicroscopyDIC microscopy enhances contrast in transparent, unstained samples by converting phase...
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相关实验视频

Updated: May 2, 2026

Spatial Profiling of Protein and RNA Expression in Tissue: An Approach to Fine-Tune Virtual Microdissection
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开放ST:高分辨率的3D空间转录学

Marie Schott1, Daniel León-Periñán1, Elena Splendiani2

  • 1Laboratory for Systems Biology of Regulatory Elements, Berlin Institute for Medical Systems Biology (BIMSB), Max-Delbrück-Centrum for Molecular Medicine in the Helmholtz Association (MDC), Hannoversche Str. 28, 10115 Berlin, Germany.

Cell
|June 25, 2024
PubMed
概括
此摘要是机器生成的。

开放ST提供了一个开源的空间转录学 (ST) 方法,用于高分辨率,成本高效的组织分析. 这种工具可以进行三维重建,

关键词:
在HNSCC癌症发生转移开放源码一个资源一个单元空间转录学亚细胞三维的

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科学领域:

  • 分子生物学
  • 基因组学
  • 生物信息学

背景情况:

  • 空间转录学 (ST) 方法对于理解组织复杂性至关重要.
  • 现有的ST方法在易用性,分辨率,成本和3D可扩展性方面面临挑战.

研究的目的:

  • 介绍一个基于2D和3D空间转录的开源资源Open-ST.
  • 应对高分辨率,成本效益和可扩展的ST方法的需求.

主要方法:

  • 开发一个名为Open-ST的开源实验和计算框架.
  • 应用Open-ST对小鼠大脑进行细胞下分辨率转录捕获.
  • 在头瘤和淋巴结上利用开放式ST进行免疫,结构和瘤细胞群体分析.

主要成果:

  • 在小鼠大脑中,Open-ST实现了亚细胞分辨率,使细胞类型重建成为可能.
  • 在瘤和淋巴结中成功捕获多种细胞群,通过ST成像验证.
  • 确定了瘤中通信热点周围细胞状态的空间组织.
  • 转移性淋巴结的3D重建显示了在2D中看不到的瘤边界的结构和生物标志物.

结论:

  • 开放ST为先进的空间转录学研究提供了多功能和可访问的平台.
  • 该方法提供了高分辨率的组织洞察和2D和3D的细胞相互作用.
  • 开放式科学技术有助于发现新的生物标志物,并在空间层面了解疾病机制.