全球RNA结构探测的超低输入方法揭示了巨细胞中的Regnase-1-介导调节
Meiling Piao1,2,3, Pan Li1,2,3, Xiaomin Zeng4,5
1MOE Key Laboratory of Bioinformatics, Center for Synthetic and Systems Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China.
Fundamental research
|June 27, 2024
概括
一种名为smartSHAPE的新方法允许以最小的输入进行RNA结构探测,揭示了RNA结构在炎症期间如何变化,并影响巨细胞中的免疫反应.
科学领域:
- 分子生物学分子生物学
- 基因组学就是基因组学.
- 免疫学 免疫学 免疫学
背景情况:
- RNA分子折叠成复杂的结构,对细胞功能和调节至关重要.
- 了解本地细胞环境中的RNA结构至关重要,但目前的方法具有挑战性.
- 现有的RNA探测技术往往需要大量的RNA输入,并且很难进行生理学研究.
研究的目的:
- 开发一种高效的RNA结构探测方法,需要最小的RNA输入.
- 研究生物环境中的动态RNA结构变化,特别是在炎症期间.
- 探索RNA结构变化在调节免疫反应中的作用.
主要方法:
- 开发智能SHAPE,一种新的RNA结构探测技术.
- 智能SHAPE具有减少探测信号文物和提高图书馆构建效率的功能.
- 在炎症期间,smartSHAPE的应用在小鼠肠道巨细胞中分析RNA结构.
主要成果:
- 智能SHAPE成功地对小鼠肠道巨细胞中的RNA结构格局进行了分析.
- 证明RNA构造变化与免疫反应的调节有关.
- 为响应炎症刺激的动态RNA结构变化提供了证据.
结论:
- 智能SHAPE显著降低了结构探测的RNA输入要求,从而实现了更广泛的应用.
- 该方法有助于在生理学上相关的系统中研究RNA结构.
- 智能SHAPE为研究转录后调节和RNA结构动态提供了一个新的范式.
相关概念视频
Types of RNA
Overview
Three main types of RNA are involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). These RNAs perform diverse functions and can be broadly classified as protein-coding or non-coding RNA. Non-coding RNAs play important roles in the regulation of gene expression in response to developmental and environmental changes. Non-coding RNAs in prokaryotes can be manipulated to develop more effective antibacterial drugs for human or animal use.
RNA...
Three main types of RNA are involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). These RNAs perform diverse functions and can be broadly classified as protein-coding or non-coding RNA. Non-coding RNAs play important roles in the regulation of gene expression in response to developmental and environmental changes. Non-coding RNAs in prokaryotes can be manipulated to develop more effective antibacterial drugs for human or animal use.
RNA...
RNA Interference
RNA interference (RNAi) is a process in which a small non-coding RNA molecule blocks the post-transcriptional expression of a gene by binding to its messenger RNA (mRNA) and preventing the protein from being translated.
This process occurs naturally in cells, often through the activity of genomically-encoded microRNAs. Researchers can take advantage of this mechanism by introducing synthetic RNAs to deactivate specific genes for research or therapeutic purposes. For example, RNAi could be used...
This process occurs naturally in cells, often through the activity of genomically-encoded microRNAs. Researchers can take advantage of this mechanism by introducing synthetic RNAs to deactivate specific genes for research or therapeutic purposes. For example, RNAi could be used...
Experimental RNAi
RNA interference (RNAi) is a cellular mechanism that inhibits gene expression by suppressing its transcription or activating the RNA degradation process. The mechanism was discovered by Andrew Fire and Craig Mello in 1998 in plants. Today, it is observed in almost all eukaryotes, including protozoa, flies, nematodes, insects, parasites, and mammals. This precise cellular mechanism of gene silencing has been developed into a technique that provides an efficient way to identify and determine the...
Ribosome Profiling
Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique helps...
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique helps...
Regulation of Expression at Multiple Steps
The gene expression in cells is regulated at different stages: (i) transcription, (ii) RNA processing, (iii) RNA localization, and (iv) translation. Transcriptional regulation is mediated by regulatory proteins such as transcription factors, activators, or repressors—these control gene expression by initiating or inhibiting the transcription of genes. Once a precursor or pre-mRNA is produced, it undergoes post-transcriptional modification, including 5' capping, splicing, and the addition of a...
Translational Regulation
Translational regulation in prokaryotes ensures efficient protein synthesis by controlling ribosome access to mRNA. This regulation is mediated by secondary RNA structures, including translational riboswitches, RNA thermometers, and small RNAs (sRNAs), which respond to intracellular and environmental signals to modulate gene expression.Translational RiboswitchesRiboswitches in the leader region of mRNAs can regulate translation by altering the accessibility of the Shine-Dalgarno (SD) sequence,...


