cProSite:一个基于网络的互动平台,用于在线蛋白质组学,蛋白质组学和基因组学数据分析.
Dunrui Wang1, Xiaolan Qian1, Yi-Chieh Nancy Du2
1Laboratory of Cellular Oncology, National Cancer Institute, National Institutes of Health, Bethesda, MD.
概括
我们创建了cProSite,这是一个用户友好的网站,用于分析癌症基因组学,蛋白质组学和蛋白质组学数据. 该工具通过比较瘤和正常组织的分子数据来帮助识别潜在的药物点.
科学领域:
- 生物信息学是一种生物信息学.
- 癌症研究 癌症研究
- 基因组学和蛋白质组学
背景情况:
- 国家癌症研究所的临床蛋白质瘤分析联盟 (CPTAC) 产生了大量的癌症数据.
- 分析复杂的基因组学,蛋白质组学和蛋白质组学数据对于理解癌症生物学和确定治疗点至关重要.
研究的目的:
- 开发一个可访问的在线平台cProSite,用于分析CPTAC数据.
- 为了促进蛋白质和mRNA在瘤和正常组织中的表达之间的比较和相关性.
- 支持临床数据验证和药物标发现.
主要方法:
- 开发一个用户友好的网站界面.
- 实现用于数据检索的快速搜索引擎.
- 专注于对多主题数据的比较和相关分析.
主要成果:
- cProSite提供综合的基因组学,蛋白质组学和蛋白质组学分析.
- 该平台可以比较瘤和正常组织的分子形状.
- 搜索结果为识别潜在的毒品目标提供了战略见解.
结论:
- cProSite是生物学家和临床医生的宝贵资源.
- 该工具增强了CPTAC数据对癌症研究和药物发现的有用性.
- 可访问的多学科数据分析可以加速临床应用.
相关概念视频
Proteomics
7.3K
A proteome is the entire set of proteins that a cell type produces. We can study proteomes using the knowledge of genomes because genes code for mRNAs, and the mRNAs encode proteins. Although mRNA analysis is a step in the right direction, not all mRNAs are translated into proteins.
Proteomics is the study of proteomes' function. It involves the large-scale systematic study of the proteome to denote the protein complement expressed by a genome. Scientist Mark Wilkins coined the term...
Proteomics is the study of proteomes' function. It involves the large-scale systematic study of the proteome to denote the protein complement expressed by a genome. Scientist Mark Wilkins coined the term...
7.3K
Protein Networks
3.9K
An organism can have thousands of different proteins, and these proteins must cooperate to ensure the health of an organism. Proteins bind to other proteins and form complexes to carry out their functions. Many proteins interact with multiple other proteins creating a complex network of protein interactions.
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
3.9K
Protein-protein Interfaces
12.5K
Many proteins form complexes to carry out their functions, making protein-protein interactions (PPIs) essential for an organism's survival. Most PPIs are stabilized by numerous weak noncovalent chemical forces. The physical shape of the interfaces determines the way two proteins interact. Many globular proteins have closely-matching shapes on their surfaces, which form a large number of weak bonds. Additionally, many PPIs occur between two helices or between a surface cleft and a...
12.5K


