口腔微生物群落的无标签量化蛋白质组学
Marwan Mansoor Ali Mohammed1,2, Jack-Ansgar Bruun3, Veronika Kuchařová Pettersen4,5,6
1Department of Oral and Craniofacial Health Sciences, College of Dental Medicine, University of Sharjah, Sharjah, United Arab Emirates. mmmohammed@sharjah.ac.ae.
Methods in molecular biology (Clifton, N.J.)
|June 28, 2024
概括
本研究介绍了使用无凝,无标签质谱仪分析口腔细菌蛋白质的详细工作流程. 该协议有助于理解微生物相互作用,并从口服生物膜和浮游生物培养中识别潜在的疫苗点.
科学领域:
- 微生物学 微生物学
- 蛋白质组学是指蛋白质组学.
- 生物信息学是一种生物信息学.
背景情况:
- 口腔是各种微生物的息地,主要是细菌,它们与宿主和其他微生物的相互作用对于理解至关重要.
- 在毒性口腔细菌中识别抗原蛋白是开发有效疫苗的关键.
研究的目的:
- 描述口腔细菌物种无凝和无标签蛋白质组分析的综合工作流程.
- 为在体外多种口腔细菌模型中进行元蛋白质组学研究提供指导.
主要方法:
- 在生物膜和浮游生物状态下培养口腔细菌.
- 蛋白质提取,消化,清理,以及液体染色学-双重质谱学 (LC-MS/MS) 分析.
- 蛋白质组数据的生物信息学分析,包括数据库选择策略.
主要成果:
- 建立了口腔细菌可复制蛋白质组分析的详细协议.
- 解决了细菌培养和蛋白质数据库选择方面的挑战.
- 工作流程促进了口腔微生物群落的研究和潜在的疫苗候选人的识别.
结论:
- 描述的工作流是对研究人员进行口腔细菌的metaproteomic实验的宝贵资源.
- 该协议支持对宿主微生物相互作用的研究以及对口腔疾病的新型诊断和治疗方法的开发.
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