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相关概念视频

Next-generation Sequencing03:00

Next-generation Sequencing

88.6K
The first human genome sequencing project cost $2.7 billion and was declared complete in 2003, after 15 years of international cooperation and collaboration between several research teams and funding agencies. Today, with the advent of next-generation sequencing technologies, the cost and time of sequencing a human genome have dropped over 100 fold.
Next-Generation Sequencing Methods
Although all next-generation methods use different technologies, they all share a set of standard features....
88.6K
Genome Annotation and Assembly03:36

Genome Annotation and Assembly

18.8K
The genome refers to all of the genetic material in an organism. It can range from a few million base pairs in microbial cells to several billion base pairs in many eukaryotic organisms. Genome assembly refers to the process of taking the DNA sequencing data and putting it all back together in a correct order to create a close representation of the original genome. This is followed by the identification of functional elements on the newly assembled genome, a process called genome annotation.
18.8K
RNA-seq03:21

RNA-seq

9.9K
RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while...
9.9K
Genomics02:02

Genomics

36.3K
Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
36.3K
Flow Cytometry01:23

Flow Cytometry

12.6K
The development of flow cytometry techniques began in 1934 with initial attempts by Andrew Moldavan, a bacteriologist who counted the cells in a flowing capillary system. Moldavan pumped cells through a capillary tube focused under a microscope for visualization. The invention of photometry allowed the measurement of differentially-stained cells, and Louis Kamentsky developed the first multiparameter flow cytometer in 1965 to identify and count the cancer cells in cervical tissue specimens.
In...
12.6K
Sanger Sequencing01:57

Sanger Sequencing

754.0K
DNA sequencing is a fundamental technique that is routinely used in the biological sciences. This method can be applied to a range of questions at different scales - from the sequencing of a cloned DNA fragment or the study of a mutation in a gene up to whole-genome sequencing. However, despite the widespread use of sequencing today, it was not until 1977 that Fredrick Sanger and his collaborators developed the chain-termination method to decode DNA sequences. It relies on the separation of a...
754.0K

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相关实验视频

Updated: Jun 22, 2025

Leveraging CyVerse Resources for De Novo Comparative Transcriptomics of Underserved Non-model Organisms
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Leveraging CyVerse Resources for De Novo Comparative Transcriptomics of Underserved Non-model Organisms

Published on: May 9, 2017

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一个基于云的培训模块,用于使用Nextflow和谷歌云计算高效的de novo转录组装.

Ryan P Seaman1, Ross Campbell2, Valena Doe3

  • 1MDI Biological Laboratory, 159 Old Bar Harbor Road, Bar Harbor, ME 04609, USA.

Briefings in bioinformatics
|June 28, 2024
PubMed
概括
此摘要是机器生成的。

本研究介绍了一个基于云的学习模块,用于新的转录组装. 它教授计算工作流程和高效的云资源使用,减少对生物信息学现场计算的需求.

关键词:
标注注释 标注注释组装的组装组装的组装.云计算是云计算中的一个.下一个流是下一个流.培训模块培训模块培训模块转录组 (transcriptome) 是一个转录组.

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Novel Sequence Discovery by Subtractive Genomics
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Novel Sequence Discovery by Subtractive Genomics

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Author Spotlight: Cost-Effective Transcriptomic Drug Screening - Unlocking New Targets

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相关实验视频

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Leveraging CyVerse Resources for De Novo Comparative Transcriptomics of Underserved Non-model Organisms

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Novel Sequence Discovery by Subtractive Genomics
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Novel Sequence Discovery by Subtractive Genomics

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Author Spotlight: Cost-Effective Transcriptomic Drug Screening - Unlocking New Targets
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Author Spotlight: Cost-Effective Transcriptomic Drug Screening - Unlocking New Targets

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科学领域:

  • 生物信息学是一种生物信息学.
  • 计算生物学 计算生物学
  • 基因组学就是基因组学.

背景情况:

  • 生物医学研究人员需要新的技能来利用云计算资源.
  • 云平台为数据访问和分析提供了强大的,具有成本效益的解决方案.
  • 传统的现场计算可以成为先进生物信息学任务的障碍.

研究的目的:

  • 开发一个交互式的,基于云的培训模块,用于新的转录组装.
  • 为了展示Nextflow用于计算工作流程的使用.
  • 教导高成本和资源效率地利用谷歌云平台服务.

主要方法:

  • 在NIGMS沙盒中开发一个学习模块,用于基于云的学习平台.
  • 使用de novo转录组组件作为一个生物学案例研究.
  • 与谷歌云平台集成,用于交互式数据访问和分析.

主要成果:

  • 该模块有效地教导Nextflow计算工作流.
  • 展示了云资源在生物信息学任务中的有效使用.
  • 突出了现场计算的可访问性和减少的必要性.

结论:

  • 基于云的培训模块对于提高生物医学研究人员的技能是有效的.
  • 通过使用云基础设施,可以成功地教授De novo转录组装.
  • NIGMS沙盒为基于云的生物信息学教育提供了宝贵的资源.