一个染色体层次的基因组组合和对Oecanthus rufescens (Orthoptera:Oecanthidae) 的注释
Xuan Jing1, Hui-Yao Zhao1, Yan-Na Zheng1
1College of Life Sciences, Shaanxi Normal University, 710119 Xi'an, China.
Genome biology and evolution
|July 1, 2024
概括
研究人员对Oecanthus rufescens的基因组进行了测序,产生了高质量的染色体水平组合. 这为了解板遗传学和进化提供了宝贵的资源.
科学领域:
- 基因组学就是基因组学.
- 昆虫学 昆虫学是一门学科.
- 生物信息学是一种生物信息学.
背景情况:
- 以其叫而闻名的Oecanthus属在全球分布.
- 了解板基因组对于进化和生态研究至关重要.
研究的目的:
- 为了对Oecanthus rufescens基因组进行全面的检查.
- 为了生成O. rufescens的高质量,染色体水平的基因组组合.
主要方法:
- 基因组测序技术的技术.
- 生物信息学分析
- 染色体层次的基因组组合.
主要成果:
- 用十个伪染色体获得了877.9Mb的高质量基因组组.
- 基因组注释显示了15031个蛋白质编码基因和显著的重复序列 (35.3%).
- 高BUSCO得分 (96.8%单拷贝) 证实了优异的基因组完整性和质量.
结论:
- 罗夫森的染色体级基因组为未来的遗传研究提供了坚实的基础.
- 这种基因组资源将有助于研究的进化,行为和种群遗传学.
更多相关视频
12:10An Experimental and Bioinformatics Protocol for RNA-seq Analyses of Photoperiodic Diapause in the Asian Tiger Mosquito, Aedes albopictus
Published on: November 30, 2014
13.3K
12:08Hybrid De Novo Genome Assembly for the Generation of Complete Genomes of Urinary Bacteria using Short- and Long-read Sequencing Technologies
Published on: August 20, 2021
5.0K
相关概念视频
Genome Annotation and Assembly
18.8K
The genome refers to all of the genetic material in an organism. It can range from a few million base pairs in microbial cells to several billion base pairs in many eukaryotic organisms. Genome assembly refers to the process of taking the DNA sequencing data and putting it all back together in a correct order to create a close representation of the original genome. This is followed by the identification of functional elements on the newly assembled genome, a process called genome annotation.
18.8K
Lampbrush Chromosomes
7.9K
In 1882, Flemming observed lampbrush chromosomes (LBC) in salamander eggs. Later in 1892, Rückert observed LBCs in shark egg cells and coined the term "lampbrush chromosomes" because they looked like brushes used to clean kerosene lamps.
LBCs are made up of two pairs of conjugating homologous chromatids. Each chromatid consists of alternatively positioned regions of condensed-inactive chromatin and loosely placed-active side loops, which can be contracted and extended. The loops...
LBCs are made up of two pairs of conjugating homologous chromatids. Each chromatid consists of alternatively positioned regions of condensed-inactive chromatin and loosely placed-active side loops, which can be contracted and extended. The loops...
7.9K
Evolutionary Relationships through Genome Comparisons
5.7K
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
5.7K
Cis-regulatory Sequences
9.8K
Cis-regulatory sequences are short fragments of non-coding DNA that are present on the same chromosomes as the genes that they regulate. These fragments serve as binding sites for transcriptional regulators, proteins that are responsible for controlling gene transcription and differential gene expression across cell types in eukaryotes. Cis-regulatory sequences can be close to the gene of interest or thousands of bases away in the DNA sequence; however, those sequences that are further away are...
9.8K
