重新审视了在信号网络中蝶结架构的演变
Thoma Itoh1,2,3, Yohei Kondo1,2,3, Kazuhiro Aoki1,2,3
1National Institute for Basic Biology, National Institutes of Natural Sciences, 5-1 Higashiyama, Myodaiji-cho, Okazaki, Aichi, 444-8787, Japan.
NPJ systems biology and applications
|July 1, 2024
概括
在细胞分子网络中常见的蝶结网络架构,令人惊的是,它是进化的副产品,而不是直接的适应. 这发生在交互链的强度最初很小或输入输出矩阵增加时.
科学领域:
- 系统生物学 系统生物学
- 进化生物学 进化生物学
- 网络科学 网络科学
背景情况:
- 蝶结架构,以狭窄的中间层为特征,在细胞分子网络中普遍存在.
- 以前的理论表明,它的出现与特定的输入-输出目标和乘法突变有关.
- 这种结构背后的普遍进化机制仍然是一个活跃的研究领域.
研究的目的:
- 调查驱动bow-tie网络架构出现的基本条件.
- 通过进化模拟来澄清蝶结结构形成的潜在机制.
- 为了确定蝶结架构是适应性特征还是进化的副产品.
主要方法:
- 以不同初始链接强度的前网络的进化模拟.
- 动态系统分析以了解网络行为.
- 分析输出矩阵属性对网络结构的影响.
主要成果:
- 当初分子相互作用的链接强度很小时,无论目标矩阵排名如何,蝶结架构不可避免地会出现.
- 动态系统分析揭示了驱动蝶结形成的机制.
- 增加的输入-输出矩阵复杂性促进了蝶结架构,即使初始链接强度很大.
结论:
- 弓带网络架构似乎是进化过程的常见副作用,而不是直接的适应性结果.
- 最初的条件,特别是小链接强度,在它的自发出现中起着至关重要的作用.
- 这项研究为生物学网络结构的非适应性起源提供了新的见解.
相关概念视频
IP3/DAG Signaling Pathway
12.0K
Membrane lipids such as phosphatidylinositol (PI) are precursors for several membrane-bound and soluble second messengers. Specific kinases phosphorylate PI and produce phosphorylated inositol phospholipids. One such inositol phospholipids are the phosphatidylinositol-4,5 bisphosphate [PI(4,5)P2], present in the inner half of the lipid bilayer. Upon ligand binding, GPCR stimulates Gq proteins to turn on phospholipase Cꞵ. Activated phospholipase Cꞵ cleaves PI(4,5)P2 and...
12.0K
Interactions Between Signaling Pathways
6.3K
Signaling cascades usually lack linearity. Multiple pathways interact and regulate one another, allowing cells to integrate and respond to diverse environmental stimuli.
Convergence and divergence, and cross-talk between signaling pathways
Two distinct signaling pathways can converge on a single functional unit, which may either be a single protein or a complex of proteins. The response is either functionally distinct or synergistic between the two pathways but different from the response...
Convergence and divergence, and cross-talk between signaling pathways
Two distinct signaling pathways can converge on a single functional unit, which may either be a single protein or a complex of proteins. The response is either functionally distinct or synergistic between the two pathways but different from the response...
6.3K
Assembly of Signaling Complexes
5.7K
Multiprotein signaling complexes are formed in a dynamic process involving protein-protein interactions at the cytoplasmic domain of transmembrane receptors or enzymatic and non-enzymatic proteins associated with the receptor. These complexes ensure the activation and propagation of intracellular signals that regulate cell functions.
Interaction domains in cell signaling
Interaction domains recognize exposed features of their binding partners containing post-translationally modified sequences,...
Interaction domains in cell signaling
Interaction domains recognize exposed features of their binding partners containing post-translationally modified sequences,...
5.7K
Types of Signaling Molecules
10.3K
In multicellular organisms, many molecules transmit signals between cells to pass information. These signals vary in complexity and include small peptides, nucleotides, steroids, fatty acid derivatives, and dissolved gases such as nitric oxide. Some signaling molecules diffuse through the plasma membrane to act locally between neighboring cells or travel long distances. Others remain attached to the cell surface, transmitting information to other cells only when they make contact. In some...
10.3K
Intracellular Signaling Cascades
46.6K
Once a ligand binds to a receptor, the signal is transmitted through the membrane and into the cytoplasm. The continuation of a signal in this manner is called signal transduction. Signal transduction only occurs with cell-surface receptors, which cannot interact with most components of the cell, such as DNA. Only internal receptors can interact directly with DNA in the nucleus to initiate protein synthesis. When a ligand binds to its receptor, conformational changes occur that affect the...
46.6K
Signal Transduction: Overview
8.4K
Cells respond to many types of information, often through receptor proteins positioned on the membrane. They respond to chemical signals, such as hormones, neurotransmitters, and other signaling molecules, initiating a series of molecular reactions to produce an appropriate response. This is called signal transduction. Cells also coordinate different responses elicited by the same signaling molecule via mediators, allowing molecular cross-talk.
Typically, signal transduction involves three...
Typically, signal transduction involves three...
8.4K


