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一个单细胞染色质可访问性数据集的人类原始和原始的多能干细胞衍生的干细胞瘤
Jinxiu Li1,2,3, Lixin Fu1,2,3, Yunpan Li4
1College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China.
Scientific data
|July 2, 2024
概括
人类原始多能干细胞瘤为研究胚胎发育提供了一个强大的模型. 这项研究使用单细胞ATAC-seq绘制了他们细胞类型特定的表观遗传特征,揭示了发育研究的关键转录因子.
科学领域:
- 发展生物学 发展生物学
- 干细胞生物学 干细胞生物学
- 表观遗传学 在表观遗传学中,表观遗传学是指表观遗传学.
背景情况:
- 瘤是人类胚胎发育的有价值的模型,因为它们的分化潜力.
- 与原始多能干细胞 (PSC) 衍生的形瘤相比,形多能干细胞 (PSC) 衍生的形瘤表现出更大的细胞多样性,并包括与原始PSC形瘤相比的胚胎外血统.
- 原始的PSC瘤的表观遗传特征对于理解发育过程至关重要,但仍然没有表征.
研究的目的:
- 来自人类原始PSCs的瘤的细胞类型特定表观遗传景观的特征.
- 为了比较原始和原始的PSC瘤之间的表观遗传特征.
- 在这些模型中确定驱动细胞类型规范的关键转录因素.
主要方法:
- 使用转化酶可访问的染色体测序 (scATAC-seq) 的单细胞测定方法.
- 分析了来自五个原始和原始化的人类PSC衍生性瘤的66,384个细胞概况.
- 计算分析以识别不同的细胞类型和转录因子结合部位.
主要成果:
- 鉴定了17种不同的细胞类型,跨胚胎和胚胎外血统,在体内.
- 观察到的细胞类型与人类胎儿组织中发现的细胞类型非常相似.
- 发现了细胞类型特定的转录因子签名,为监管程序提供了洞察力.
结论:
- 原始的PSC衍生的瘤作为人类胚胎和胚胎外发育的强大模型.
- scATAC-seq数据集为研究发育中的基因调节网络提供了宝贵的资源.
- 这项工作阐明了瘤模型中细胞分化的表观遗传基础.
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