在分子晶体中对局部环境的机器学习分类
Daisuke Kuroshima1, Michael Kilgour1, Mark E Tuckerman1,2,3,4
1Department of Chemistry, New York University (NYU), New York, New York 10003, United States.
Journal of chemical theory and computation
|July 3, 2024
概括
这项研究引入了两种新的机器学习模型,用于识别局部结构和分子晶体的包装. 这些方法准确地对晶体多态进行分类,并分析动态数据,推动了凝聚物质研究.
科学领域:
- 材料科学 材料科学 材料科学
- 计算化学的计算化学
- 晶体学 晶体学是指结晶学.
背景情况:
- 在分子固体中描述局部结构图案和包装模式至关重要,但对于模拟和实验来说具有挑战性.
- 了解多态是控制材料属性和预测固态行为的关键.
研究的目的:
- 开发和验证用于分子晶体中特征局部环境的新型机器学习方法.
- 为了能够准确地分类不同的多态和分析晶体动态.
主要方法:
- 利用了两个机器学习模型:一个原子图卷积网络,具有灵活学习的分子智能聚合,以及一个具有对称函数和点向量表示的新型描述器集,用于手工学习.
- 将这些模型应用于尿素和尼古丁胺胺晶体多态,以及纳米晶体和固体-固体接口的动态轨迹数据.
主要成果:
- 在各种晶体多形态上,为两种开发的模型实现了非常高的分类准确性.
- 在分析复杂的动态轨迹数据 (包括纳米晶体和接口) 中证明了实际适用性.
结论:
- 提出的学习模型有效地描述了分子晶体中的局部环境,为探索凝聚物质现象提供了重大进展.
- 灵活和手工制作的表示方法都很通用,适用于各种分子和晶体拓.
相关概念视频
Polymer Classification: Crystallinity
2.8K
Unlike ionic or small covalent molecules, polymers do not form crystalline solids due to the diffusion limitations of their long-chain structures. However, polymers contain microscopic crystalline domains separated by amorphous domains.
Crystalline domains are the regions where polymer chains are aligned in an orderly manner and held together in proximity by intermolecular forces. For example, chains in the crystalline domains of polyethylene and nylon are bound together by van der Waals...
Crystalline domains are the regions where polymer chains are aligned in an orderly manner and held together in proximity by intermolecular forces. For example, chains in the crystalline domains of polyethylene and nylon are bound together by van der Waals...
2.8K
X-ray Crystallography
23.9K
The size of the unit cell and the arrangement of atoms in a crystal may be determined from measurements of the diffraction of X-rays by the crystal, termed X-ray crystallography.
Diffraction
Diffraction is the change in the direction of travel experienced by an electromagnetic wave when it encounters a physical barrier whose dimensions are comparable to those of the wavelength of the light. X-rays are electromagnetic radiation with wavelengths about as long as the distance between neighboring...
Diffraction
Diffraction is the change in the direction of travel experienced by an electromagnetic wave when it encounters a physical barrier whose dimensions are comparable to those of the wavelength of the light. X-rays are electromagnetic radiation with wavelengths about as long as the distance between neighboring...
23.9K
X-ray Diffraction of Biological Samples
3.8K
X-ray diffraction or XRD is an analytical tool that utilizes X-rays to study ordered structures such as crystalline organic and inorganic samples, polycrystalline materials, proteins, carbohydrates, and drugs.
According to Bragg's law, when X-rays strike the sample positioned on a stage, the rays are scattered by the electron clouds around the sample atoms. The X-ray diffraction or scattering is caused by constructive interference of the X-ray waves that reflect off the internal...
According to Bragg's law, when X-rays strike the sample positioned on a stage, the rays are scattered by the electron clouds around the sample atoms. The X-ray diffraction or scattering is caused by constructive interference of the X-ray waves that reflect off the internal...
3.8K


