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和基因组编辑映射了致病性VHL等位基因的功能谱
Megan Buckley1, Chloé Terwagne1, Athina Ganner2
1The Genome Function Laboratory, The Francis Crick Institute, London, UK.
Nature genetics
|July 5, 2024
概括
识别基因变异是精准医学的关键. 这项研究精确地测量了VHL基因中几乎所有单核酸变异的功能影响,改善了临床变异分类和了解疾病风险.
科学领域:
- 遗传学 是一个遗传学.
- 分子生物学分子生物学
- 癌症研究 癌症研究
背景情况:
- 精准医学需要对遗传变异进行准确的识别和功能评估.
- ·希佩尔-林道 (VHL) 瘤抑制基因在变异解释方面提出了挑战.
- VHL基因变异与遗传性和偶发性癌症有关,包括清细胞细胞癌 (ccRCC).
研究的目的:
- 在VHL基因的编码序列中全面测试和功能性地表征几乎所有单核酸变异 (SNV).
- 描述VHL变体影响细胞功能和疾病倾向的机制.
- 改进VHL变异的临床分类,并提供基因型-表型关系的信息.
主要方法:
- 优化和应用和基因组编辑来测试VHL SNVs.
- 对VHL变异的mRNA剂量效应的量化.
- 在同源细胞系中功能效应的比较.
主要成果:
- 对于2,268个VHL SNV,生成了功能分数.
- 一组致病性VHL基因组驱动ccRCC的核心组被识别得非常准确.
- 结果提供了差异性癌症风险信息,并揭示了新型变异影响机制.
结论:
- 精确的功能测量VHL SNVs提高临床变异分类.
- 该研究解决了由基因剂量和类型影响的复杂的基因型-表型关系.
- 这些发现支持了在精密瘤学中全面变异功能评估的影响.
相关概念视频
Genetic Lingo
Overview
Loss of Tumor Suppressor Gene Functions
Tumor suppressor genes are normal genes that can slow down cell division, repair DNA mistakes, or program the cells for apoptosis in case of irreparable damage. Hence, they play an essential role in preventing the proliferation of damaged cells.
When the tumor suppressor genes develop mutations or are lost, cells start growing out of control, leading to cancer. However, a single functional copy of the tumor suppressor gene is enough for the cells to maintain their normal functions and cell...
When the tumor suppressor genes develop mutations or are lost, cells start growing out of control, leading to cancer. However, a single functional copy of the tumor suppressor gene is enough for the cells to maintain their normal functions and cell...
Genome-wide Association Studies-GWAS
Genome-wide association studies or GWAS are used to identify whether common SNPs are associated with certain diseases. Suppose specific SNPs are more frequently observed in individuals with a particular disease than those without the disease. In that case, those SNPs are said to be associated with the disease. Chi-square analysis is performed to check the probability of the allele likely to be associated with the disease.
GWAS does not require the identification of the target gene involved in...
GWAS does not require the identification of the target gene involved in...
Cancer-Critical Genes II: Tumor Suppressor Genes
Genes usually encode proteins necessary for the proper functioning of a healthy cell. Mutations can often cause changes to the gene expression pattern, thereby altering the phenotype.
When the function of certain critical genes, especially those involved in cell cycle regulation and cell growth signaling cascades, gets disrupted, it upsets the cell cycle progression. Such cells with unchecked cell cycles start proliferating uncontrollably and eventually develop into tumors.
Such genes that act...
When the function of certain critical genes, especially those involved in cell cycle regulation and cell growth signaling cascades, gets disrupted, it upsets the cell cycle progression. Such cells with unchecked cell cycles start proliferating uncontrollably and eventually develop into tumors.
Such genes that act...
Loss of Tumor Suppressor Gene Functions
Tumor suppressor genes are normal genes that can slow down cell division, repair DNA mistakes, or program the cells for apoptosis in case of irreparable damage. Hence, they play an essential role in preventing the proliferation of damaged cells.
When the tumor suppressor genes develop mutations or are lost, cells start growing out of control, leading to cancer. However, a single functional copy of the tumor suppressor gene is enough for the cells to maintain their normal functions and cell...
When the tumor suppressor genes develop mutations or are lost, cells start growing out of control, leading to cancer. However, a single functional copy of the tumor suppressor gene is enough for the cells to maintain their normal functions and cell...
Point and Frameshift Mutations
Point mutations are genetic alterations involving the change of a single nucleotide base pair in DNA. Depending on how the alteration affects protein synthesis, they can lead to various consequences.Point mutations fall into the following types:Silent mutations occur when a nucleotide change does not alter the amino acid sequence due to the redundancy of the genetic code. For instance, changing ACC to ACA still encodes threonine, leaving the protein function unaffected. This occurs because...

