开拓因素:在染色化DNA上的转录因子参与的新兴规则
Manuel Carminati1, Luca Vecchia2, Lisa Stoos2
1Swiss Institute for Experimental Cancer Research (ISREC), EPFL, Lausanne 1015, Switzerland.
Current opinion in structural biology
|July 11, 2024
概括
开创性的转录因子 (TFs) 在抑制色素内结合DNA. 新兴规则表明,TFs与核细胞和组织蛋白相互作用,影响基因调节和细胞命运.
科学领域:
- 分子生物学分子生物学
- 表观遗传学 在表观遗传学中,表观遗传学是指表观遗传学.
- 结构生物学 结构生物学
背景情况:
- 转录因子 (TFs) 对于细胞命运的决定至关重要.
- 染色体结构,特别是核细胞体,对TF结合构成障碍.
- 了解TF核酶相互作用是解读基因调节的关键.
研究的目的:
- 阐明转录因子与核细胞结合的结构机制.
- 确定管理TF-核酶体参与的新兴规则.
- 为了探索TF-海斯相互作用的功能后果.
主要方法:
- 对TF-核酶体复合体的最新结构数据的分析.
- 调查TFs的DNA扭曲和替代结合方式.
- 检查TF与基因组蛋白的相互作用及其依赖于动机位置的关系.
主要成果:
- TFs采用了诸如DNA扭曲或更小的足迹等策略来访问核细胞.
- 核细胞进出口点附近的图案优先结合.
- TF - 基因组相互作用是常见的,并受到动机位置,TF折叠和相邻域的影响.
结论:
- TF-核酶和TF-基因组相互作用是复杂和多样化的.
- 这些相互作用在阶段化TF动机和调节基因表达方面发挥着重要作用.
- 新兴的结构规则提供了对压制性染色体中TF功能的洞察.
相关概念视频
Transcription Factors
75.8K
Tissue-specific transcription factors contribute to diverse cellular functions in mammals. For example, the gene for beta globin, a major component of hemoglobin, is present in all cells of the body. However, it is only expressed in red blood cells because the transcription factors that can bind to the promoter sequences of the beta globin gene are only expressed in these cells. Tissue-specific transcription factors also ensure that mutations in these factors may impair only the function of...
75.8K
General Transcription Factors
5.2K
Tissue-specific transcription factors contribute to diverse cellular functions in mammals. For example, the gene for beta globin, a major component of hemoglobin, is present in all cells of the body. However, it is only expressed in red blood cells because the transcription factors that can bind to the promoter sequences of the beta globin gene are only expressed in these cells. Tissue-specific transcription factors also ensure that mutations in these factors may impair only the function of...
5.2K
RNA Polymerase II Accessory Proteins
9.2K
Proteins that regulate transcription can do so either via direct contact with RNA Polymerase or through indirect interactions facilitated by adaptors, mediators, histone-modifying proteins, and nucleosome remodelers. Direct interactions to activate transcription is seen in bacteria as well as in some eukaryotic genes. In these cases, upstream activation sequences are adjacent to the promoters, and the activator proteins interact directly with the transcriptional machinery. For example, in...
9.2K
Transcription Elongation Factors
10.8K
Transcription elongation is a dynamic process that alters depending upon the sequence heterogeneity of the DNA being transcribed. Hence, it is not surprising that the elongation complex's composition also varies along the way while transcribing a gene.
The transcription elongation is regulated via pausing of RNA polymerase on several occasions during transcription. In bacteria, these halts are necessary because the transcription of DNA into mRNA is coupled to the translation of that mRNA...
The transcription elongation is regulated via pausing of RNA polymerase on several occasions during transcription. In bacteria, these halts are necessary because the transcription of DNA into mRNA is coupled to the translation of that mRNA...
10.8K
Transcription Initiation
16.4K
Initiation is the first step of transcription in eukaryotes. Prokaryotic RNA Polymerase (RNAP) can bind to the template DNA and start transcribing. On the other hand, transcription in eukaryotes requires additional proteins, called transcription factors, to first bind to the promoter region in the DNA template. This binding helps recruit the specific RNAP that can assemble on the DNA and start transcription.
The promoters and enhancers and their accessory proteins allow tight regulation of...
The promoters and enhancers and their accessory proteins allow tight regulation of...
16.4K
Eukaryotic Transcription Activators
10.9K
Transcription activators are proteins that promote the transcription of genes from DNA to RNA. In most cases, these proteins contain two separate domains ‒ a domain that binds to DNA and a domain for activating transcription; however, in some cases, a single domain is responsible for both binding and activation of transcription, as seen in the glucocorticoid receptor and MyoD.
The binding domains are capable of recognizing and interacting with regulatory sequences on the DNA. These...
The binding domains are capable of recognizing and interacting with regulatory sequences on the DNA. These...
10.9K


