染色体层次的基因组组装数据来自白的,Zacco形 (乔丹和埃弗曼,1902)
Sang-Eun Nam1, Jae-Sung Rhee1,2,3
1Department of Marine Science, College of Natural Sciences, Incheon National University, Incheon, 22012, South Korea.
Data in brief
|July 18, 2024
概括
我们向您介绍了东亚重要淡水鱼白 (Zacco platypus) 的第一个de novo基因组组. 这种高质量的参考基因组将支持生态和健康研究.
科学领域:
- 基因组学就是基因组学.
- 水生生态学 水生生态学
- 生物信息学是一种生物信息学.
背景情况:
- 白色 (Zacco platypus) 是一个在东亚广泛分布的淡水鱼.
- 高质量的基因组组装对于理解其生物学和生态作用至关重要.
研究的目的:
- 为了构建一个新的基因组组合Zacco形.
- 为基础和应用研究提供有价值的基因组资源.
主要方法:
- 使用了长读PacBio,短读Illumina和Hi-C的测序.
- 使用Hifiasm进行组装,并使用RNA-Seq和Iso-Seq数据进行基因注释.
主要成果:
- 产生了838.6 Mb的基因组组合,其中有336个结合体和31.9 Mb的N50.
- 实现了高基因完整性 (98.1%BUSCO),确定了34 036个蛋白质编码基因,并生成了染色体水平的支架.
- 该组件包括41.45%的重复序列.
结论:
- 扎科鸟的染色体级基因组组合是一个重大进步.
- 这一资源将促进未来关于水生生态系统健康,发展和生态学的研究.
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