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相关概念视频

Genome Annotation and Assembly03:36

Genome Annotation and Assembly

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The genome refers to all of the genetic material in an organism. It can range from a few million base pairs in microbial cells to several billion base pairs in many eukaryotic organisms. Genome assembly refers to the process of taking the DNA sequencing data and putting it all back together in a correct order to create a close representation of the original genome. This is followed by the identification of functional elements on the newly assembled genome, a process called genome annotation.
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Evolutionary Relationships through Genome Comparisons02:54

Evolutionary Relationships through Genome Comparisons

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Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
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Multi-species Conserved Sequences02:51

Multi-species Conserved Sequences

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Next-generation sequencing technologies have created large genomic databases of a variety of animals and plants. Ever since the human genome project was completed, scientists studied the genome of primates, mammals, and other phylogenetically distant living beings. Such large-scale  studies have provided new insights into the evolutionary relationship between organisms.
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved...
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Next-generation Sequencing03:00

Next-generation Sequencing

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The first human genome sequencing project cost $2.7 billion and was declared complete in 2003, after 15 years of international cooperation and collaboration between several research teams and funding agencies. Today, with the advent of next-generation sequencing technologies, the cost and time of sequencing a human genome have dropped over 100 fold.
Next-Generation Sequencing Methods
Although all next-generation methods use different technologies, they all share a set of standard features....
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RNA-seq03:21

RNA-seq

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RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while...
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Genomics02:02

Genomics

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Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
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相关实验视频

Updated: Jun 20, 2025

An Array-based Comparative Genomic Hybridization Platform for Efficient Detection of Copy Number Variations in Fast Neutron-induced Medicago truncatula Mutants
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An Array-based Comparative Genomic Hybridization Platform for Efficient Detection of Copy Number Variations in Fast Neutron-induced Medicago truncatula Mutants

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非洲牛的基因组参考资源:基因组序列和高密度阵列变异

Abdulfatai Tijjani1,2, Sumaya Kambal3,4, Endashaw Terefe5

  • 1Centre for Tropical Livestock Genetics and Health (CTLGH), ILRI Ethiopia, P.O. Box 5689, Addis Ababa, Ethiopia. abdulfatai.tijjani@gmail.com.

Scientific data
|July 19, 2024
PubMed
概括

来自555头非洲牛的新基因组数据,包括208个新的基因组序列,增强了品种改进和弹性研究. 这种资源有助于表征土著品种,并推进全球畜牧遗传学.

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Determining the Likelihood of Variant Pathogenicity Using Amino Acid-level Signal-to-Noise Analysis of Genetic Variation
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科学领域:

  • 基因组学就是基因组学.
  • 动物科学动物科学
  • 生物信息学是一种生物信息学.

背景情况:

  • 基因组多样性对于改善当地的牛品种和了解性机制至关重要.
  • 非洲牛的现有基因组资源有限,阻碍了全面的表征和利用.

研究的目的:

  • 为了生成和呈现新的基因组序列和高密度的非洲原住民牛的基因型数据.
  • 扩大非洲牛的基因组参考资源 (GRRFAC) 用于品种特征和可持续畜牧业改进.

主要方法:

  • 555个牛基因组 (208个新基因组) 的测序,平均覆盖率约为30X.
  • 高密度 (HD) 阵列基因定型对1082个牛样 (537个新).
  • 变异调用和映射到Bos taurus参考基因组 (ARS-UCD1.2).2) 的变异调用和映射.

主要成果:

  • 识别了大约3230万个序列变异.
  • 发现了661,943个HD自体变体的发现.
  • 与公共领域资源相比,生成覆盖范围更高的基因组数据.

结论:

  • 新的基因组数据集显著丰富了非洲牛的资源.
  • 这个倡议支持全面的本土品种特征和可持续的全球畜牧业改进.
  • 增强的基因组资源有助于基因发现和对牛的弹性理解.