预测跨越各种障碍物的透性:一个系统的调查
Xiaorong Tan1, Qianhui Liu1, Yanpeng Fang1
1Xiangya School of Pharmaceutical Sciences, Central South University, Changsha 410083, China.
Molecular pharmaceutics
|July 20, 2024
概括
这项研究开发了新的机器学习模型,包括图形神经网络 (GNN) 框架,以准确预测透性. 这些工具通过评估细胞膜透率来增强药物输送和类药物发现.
科学领域:
- 药理学和药物输送 药理学和药物输送
- 计算化学计算化学
- 生物技术是生物技术.
背景情况:
- 类疗法显示出巨大的潜力,但面临着细胞膜透性的挑战.
- 不良的透性限制了的细胞内传递和口服药物开发.
研究的目的:
- 使用图形神经网络 (GNN) 和机器学习开发透性的预测模型.
- 系统地评估各种类型和细胞系的透性.
- 确定影响透性的关键分子特征.
主要方法:
- 开发了一种新的GNN框架和机器学习算法,用于透性预测.
- 评估了使用Caco-2,RRCK和PAMPA试验对自然,改性,线性和循环的模型.
- 解释了影响透性的分子结构特征以及细胞系和修饰的影响.
主要成果:
- 在Caco-2和RRCK细胞系中实现了对线性和周期性的高预测精度 (R2高达0.708).
- 在更大的数据集中,GNN框架表现出优异的性能,在PAMPA中改善了循环预测的~0.32 R2.2.
- 成功识别了关键的分子特征和影响透性的因素.
结论:
- 开发的GNN框架提供了一个快速可靠的策略来评估透性.
- 这些模型有助于优化类药物递送,预选类,以及设计向类材料.
- 这些模型可以通过用户友好的KNIME平台访问,以获得更广泛的研究应用.
相关概念视频
Cellular Membranes and Drug Transport
398
Drugs must traverse multiple biological barriers, such as multi-layered skin, single-layered intestinal epithelium, and the plasma membrane, to reach their target sites within the body. The plasma membrane, a highly structured composite of phospholipids, carbohydrates, and proteins, is the cell's protective boundary, facilitating selective substance exchange.
Phospholipids arrange themselves into a bilayer, with hydrophilic heads oriented outward and hydrophobic tails facing inward.
Phospholipids arrange themselves into a bilayer, with hydrophilic heads oriented outward and hydrophobic tails facing inward.
398
Physiological Barriers
3.5K
Physiological barriers are semi-permeable cellular structures restricting drug diffusion into intracellular compartments and tissues. There are six types of physiological barriers: blood endothelial, cell membrane, blood-brain, blood-cerebrospinal fluid (CSF), blood-placenta, and blood-testis barriers.
The blood endothelial barrier is the most porous of these. It allows all small ionized, un-ionized, and lipophilic molecules to pass through the endothelial lining into the interstitial space...
The blood endothelial barrier is the most porous of these. It allows all small ionized, un-ionized, and lipophilic molecules to pass through the endothelial lining into the interstitial space...
3.5K
Carrier-Mediated Transport
323
Carrier-mediated transport is a pivotal process in drug absorption, particularly for lipid-insoluble drugs, and encompasses facilitated diffusion and active transport. Facilitated diffusion allows drugs to move along their concentration gradient without energy expenditure, while active transport utilizes ATP to drive drug movement against this gradient.
Active transport involves two types of membrane-spanning transporters: uptake and efflux. Uptake transporters are expressed in the small...
Active transport involves two types of membrane-spanning transporters: uptake and efflux. Uptake transporters are expressed in the small...
323
Pore Transport and Ion-Pair Transport
413
Pore transport and ion-pair formation are critical mechanisms for the absorption and distribution of drugs in the body.
Pore transport, also known as convective transport, is a process where small molecules like urea, water, and sugars rapidly cross cell membranes as though there were channels or pores in the membrane. Although direct microscopic evidence is limited but the concept of pores or channels is widely accepted based on physiological evidence. Despite the lack of direct...
Pore transport, also known as convective transport, is a process where small molecules like urea, water, and sugars rapidly cross cell membranes as though there were channels or pores in the membrane. Although direct microscopic evidence is limited but the concept of pores or channels is widely accepted based on physiological evidence. Despite the lack of direct...
413
Protein Diffusion in the Membrane
4.3K
Proteins show rotational as well as lateral diffusion across the membrane. The lateral diffusion of proteins was confirmed through the cell fusion experiment where mouse and human cells were fused, resulting in hybrid cells. When the human and mouse cells fused, the specific membrane proteins on human and mouse cells were marked with the red and green-fluorescent markers, respectively. Initially, the red and green fluorescence was located on the respective hemisphere of the cell. As time...
4.3K
Multi-pass Transmembrane Proteins and β-barrels
5.3K
In multi-pass transmembrane proteins, the polypeptide chain crosses the membrane more than once. The transmembrane polypeptide chain either forms an α-helix or β-strand structure. α-Helix containing multi-pass transmembrane proteins are ubiquitous, whereas β-strand containing ones are mainly found in gram-negative bacteria, mitochondria, and chloroplasts.
α-Helix containing multi-pass transmembrane proteins
Multi-pass transmembrane proteins such as...
α-Helix containing multi-pass transmembrane proteins
Multi-pass transmembrane proteins such as...
5.3K


