核酸序列表征,氨基酸变异和NDV VIId基因型的HN蛋白的3D结构分析
Amin Tavassoli1,2, Safoura Soleymani1,2, Mohammad Reza Housaindokht1,2
1Research and Technology Center of Biomolecules, Faculty of Science, Ferdowsi University of Mashhad, Mashhad, Iran.
Veterinary medicine and science
|July 20, 2024
概括
纽卡斯尔病病毒 (NDV) HN蛋白的抗原部位使用生物信息学来确定. 这项研究有助于开发新的,具有成本效益的NDV疫苗,重点关注关键的抗原残留物,以改善病毒根除策略.
科学领域:
- 病毒学 病毒学
- 免疫学 免疫学 免疫学
- 生物信息学是一种生物信息学.
背景情况:
- 血氨酸-神经aminidase (HN) 是一个关键的纽卡斯尔病病毒 (NDV) 蛋白质,对于宿主感染至关重要.
- 针对HN的抗体对于对抗NDV的宿主保护至关重要.
- HN是NDV疫苗开发的主要候选人.
研究的目的:
- 为了表征伊朗NDV分离物 (VIId亚基因型) 的HN蛋白.
- 将其氨基酸替代与其他NDV基因型和疫苗菌株进行比较.
- 使用生物信息学预测HN蛋白上的B细胞表位.
主要方法:
- 利用了伊朗NDV分离物的全长HN蛋白序列.
- 对氨基酸替代与流行NDV基因型进行了比较分析.
- 采用生物信息学工具进行3D结构确定,分子动力学模拟和B细胞表位预测.
主要成果:
- 伊朗NDV分离物的抗原区域与其他VII亚型类型相比较.
- 在HN蛋白的3D结构上确定了特定的氨基酸残留物作为潜在的B细胞表位.
- 描述了线性和构造性抗原位点.
结论:
- 生物信息学方法为设计新型NDV疫苗提供了快速和经济的方法.
- 专注于已识别的抗原残留物可以加快有效疫苗的开发.
- 这一战略有望消除像NDV这样的传染性病毒.
相关概念视频
Protein Organization
Overview
Protein and Protein Structure
Proteins are one of the most abundant organic molecules in living systems and have the most diverse range of functions of all macromolecules. Proteins may be structural, regulatory, contractile, or protective. They may serve in transport, storage, or membranes; or they may be toxins or enzymes. Their structures, like their functions, vary greatly. They are all, however, amino acid polymers arranged in a linear sequence.
A protein's shape is critical to its function. For example, an enzyme can...
A protein's shape is critical to its function. For example, an enzyme can...
Protein Families
Protein families are groups of homologous proteins; that is, they have similarities in amino acid sequences and three-dimensional structures. Protein families usually occur because of gene duplication, where an additional copy of a gene is inserted into the genome of an organism. Mutations that change the amino acids but still allow the protein to be properly synthesized, will lead to new protein family members. If these new proteins contain similar amino acids in key locations, protein...
Protein Organization
Proteins are polymers of amino acid residues. They are versatile and responsible for different cellular functions, including DNA replication, molecular transport, catalysis, and structural support. Proteins have a hierarchical structure comprising at least three levels of organization: primary, secondary, and tertiary structure. Some large proteins have a quaternary structure where individual protein subunits are linked together.
The primary structure of a protein is its amino acid sequence.
The primary structure of a protein is its amino acid sequence.
Protein Denaturation
The function of proteins depends on their native three-dimensional structure, which is dictated by the amino acid sequence of the specific protein. Folding of the polypeptide chain takes place under specific conditions that energetically favor the folded conformation. In contrast, protein denaturation occurs spontaneously under unfavorable conditions that disrupt the integrity of the folded conformation. Thus, the chemical and physical environment of a protein, such as significant changes in pH...
Nucleic Acid Structure
The pentose sugar in DNA is deoxyribose, while in RNA the pentose sugar is ribose. The difference between the sugars is the presence of the hydroxyl group on the ribose's second carbon and a hydrogen on the deoxyribose's second carbon. The phosphate residue attaches to the hydroxyl group of the 5′ carbon of one sugar and the hydroxyl group of the 3′ carbon of the sugar of the next nucleotide, which forms a 5′ to 3′ phosphodiester linkage.
DNA Structure
DNA has a double-helix structure. The...
DNA Structure
DNA has a double-helix structure. The...


