解码生态系统异质性和转录调节特征的多亚型细胞癌
Kailong Xu1, Jiang Li1, LiWei Qin1
1State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan, China.
Heliyon
|July 24, 2024
概括
这项研究揭示了癌 (RCC) 中不同的细胞亚型和通信模式. 向巨细胞和与癌症相关的纤维细胞相互作用为个性化RCC疗法提供了潜力.
科学领域:
- 在瘤学瘤学.
- 免疫学 免疫学 免疫学
- 基因组学就是基因组学.
背景情况:
- 细胞癌 (RCC) 呈现出显著的异质性和复杂的瘤微环境.
- 了解清细胞 (ccRCC),染色恐惧症 (chRCC) 和乳头细胞癌 (pRCC) 的细胞多样性至关重要.
研究的目的:
- 使用单细胞RNA测序 (scRNA-seq) 在RCC亚型中表征细胞多样性和细胞间通信网络.
- 研究RCC中的巨细胞和癌症相关纤维细胞 (CAF) 的功能状态,发育轨迹和信号通路.
主要方法:
- 对癌亚型的scRNA-seq数据分析.
- 统一的多重近似和投影 (UMAP) 用于细胞异质性评估.
- ReactomeGSA用于途径分析,CytoTRACE用于巨细胞动态,以及细胞间通信分析.
主要成果:
- 确定了不同的巨细胞和CAF亚群,在RCC亚型中具有独特的个人资料.
- ccRCC显示双向巨细胞-CAF通信;chRCC和pRCC已经破坏了通路.
- MIF信号通路被确定为细胞相互作用的关键调解器.
结论:
- RCC亚型显示显著的细胞异质性和复杂的细胞间通信网络.
- 针对特定的细胞相互作用和通路为RCC提供了新的治疗机会.
- 独特的巨细胞和CAF档案为个性化的RCC治疗策略提供了洞察力.
更多相关视频
12:22The Use of Reverse Phase Protein Arrays RPPA to Explore Protein Expression Variation within Individual Renal Cell Cancers
Published on: January 22, 2013
33.6K
06:24Multiplexed Analysis of Retinal Gene Expression and Chromatin Accessibility Using scRNA-Seq and scATAC-Seq
Published on: March 12, 2021
3.6K
相关概念视频
General Transcription Factors
5.2K
Tissue-specific transcription factors contribute to diverse cellular functions in mammals. For example, the gene for beta globin, a major component of hemoglobin, is present in all cells of the body. However, it is only expressed in red blood cells because the transcription factors that can bind to the promoter sequences of the beta globin gene are only expressed in these cells. Tissue-specific transcription factors also ensure that mutations in these factors may impair only the function of...
5.2K
Master Transcription Regulators
6.9K
Master transcription regulators are regulatory proteins that are predominantly responsible for regulating the expression of multiple genes. Often these genes work in concert to drive a complex process. Activation of a master transcription regulator can lead to a cascade of transcriptional activation necessary for that outcome. These regulators can directly bind to the regulatory sequences of the various genes involved, or they can indirectly regulate transcription by binding to regulatory...
6.9K
Epigenetic Regulation
3.0K
Epigenetic changes alter the physical structure of the DNA without changing the genetic sequence and often regulate whether genes are turned on or off. This regulation ensures that each cell produces only proteins necessary for its function. For example, proteins that promote bone growth are not produced in muscle cells. Epigenetic mechanisms play an essential role in healthy development. Conversely, precisely regulated epigenetic mechanisms are disrupted in diseases like cancer.
X-chromosome...
X-chromosome...
3.0K
Cell Specific Gene Expression
13.6K
Multicellular organisms contain a variety of structurally and functionally distinct cell types, but the DNA in all the cells originated from the same parent cells. The differences in the cells can be attributed to the differential gene expression. Liver cells, whose functions include detoxification of blood, production of bile to metabolize fats, and synthesis of proteins essential for metabolism, must express a specific set of genes to perform their functions. Gene expression also varies with...
13.6K
Combinatorial Gene Control
8.3K
Combinatorial gene control is the synergistic action of several transcriptional factors to regulate the expression of a single gene. The absence of one or more of these factors may lead to a significant difference in the level of gene expression or repression.
The expression of more than 30,000 genes is controlled by approximately 2000-3000 transcription factors. This is possible because a single transcription factor can recognize more than one regulatory sequence. The specificity in gene...
The expression of more than 30,000 genes is controlled by approximately 2000-3000 transcription factors. This is possible because a single transcription factor can recognize more than one regulatory sequence. The specificity in gene...
8.3K
Transcription Factors
75.8K
Tissue-specific transcription factors contribute to diverse cellular functions in mammals. For example, the gene for beta globin, a major component of hemoglobin, is present in all cells of the body. However, it is only expressed in red blood cells because the transcription factors that can bind to the promoter sequences of the beta globin gene are only expressed in these cells. Tissue-specific transcription factors also ensure that mutations in these factors may impair only the function of...
75.8K
