单细胞色素可访问性和可转移的元素景观揭示了组织居住免疫细胞的共同特征
Malte Simon1, Philipp Stüve2, Lisa Schmidleithner2
1Division of Applied Bioinformatics, German Cancer Research Center (DKFZ), 69120 Heidelberg, Germany; Faculty of Biosciences, Heidelberg University, 69120 Heidelberg, Germany; Leibniz Institute for Immunotherapy, 93053 Regensburg, Germany; Chair for Immunology, University Regensburg, 93053 Regensburg, Germany.
Immunity
|July 24, 2024
概括
免疫细胞适应特定的器官,这一过程由调节性T (Treg) 细胞和其他免疫细胞 (如T辅助17细胞) 分享. 在DNA中的可移植元素调节这种组织适应,特别是在增强器区域.
科学领域:
- 免疫学 免疫学 免疫学
- 基因组学就是基因组学.
- 细胞生物学 细胞生物学
背景情况:
- 组织适应对于器官中调节性T (Treg) 细胞功能至关重要.
- 目前尚不清楚这种适应程序是否与其他组织局部化免疫细胞共享.
研究的目的:
- 为了研究器官特异性免疫细胞适应.
- 探索可移植元素 (TE) 在组织适应中的作用.
主要方法:
- 来自结肠,皮肤,脂肪组织和脏的免疫细胞的单细胞色素可访问性分析.
- 对可转移元素 (TE) 景观的分析.
- 在TE区域内识别转录因子结合动机.
主要成果:
- 识别了各种免疫细胞的器官特异性组织适应特征.
- 在其他免疫细胞中发现Treg组织适应程序的保存,如T助手17细胞.
- 证明了特定的TEs,特别是LTR家族,位于增强器区域,并与组织适应有关.
结论:
- 免疫细胞组织适应程序在不同的免疫细胞类型中得到保护.
- 可转移的元素通过作为调节元素,有助于免疫细胞组织的适应.
- 这些发现有助于更好地了解免疫细胞的存在,并为器官特异性免疫干预提供信息.
相关概念视频
Chromatin Modification in iPS Cells
1.6K
Chromatin modification alters gene expression; therefore, scientists can add histone-modifying enzymes, histone variants, and chromatin remodeling complexes to somatic cells to aid reprogramming into pluripotent stem (iPS) cells.
Compact chromatin makes reprogramming difficult. Enzymes, such as histone demethylases and acetyltransferases, are often added during reprogramming to loosen the chromatin, making the DNA more accessible to transcription factors. Molecules that inhibit histone...
Compact chromatin makes reprogramming difficult. Enzymes, such as histone demethylases and acetyltransferases, are often added during reprogramming to loosen the chromatin, making the DNA more accessible to transcription factors. Molecules that inhibit histone...
1.6K
Inheritance of Chromatin Structures
6.2K
Epigenetics is the study of inherited changes in a cell's phenotype without changing the DNA sequences. It provides a form of memory for the differential gene expression pattern to maintain cell lineage, position-effect variegation, dosage compensation, and maintenance of chromatin structures such as telomeres and centromeres. For example, the structure and location of the centromere on chromosomes are epigenetically inherited. Its functionality is not dictated or ensured by the underlying...
6.2K
Chromatin Position Affects Gene Expression
23.3K
Chromatin is the massive complex of DNA and proteins packaged inside the nucleus. The complexity of chromatin folding and how it is packaged inside the nucleus greatly influences access to genetic information. Generally, the nucleus' periphery is considered transcriptionally repressive, while the cell's interior is considered a transcriptionally active area.
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the...
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the...
23.3K
Overview of Transposition and Recombination
15.4K
Transposons make up a significant part of genomes of various organisms. Therefore, it is believed that transposition played a major evolutionary role in speciation by changing genome sizes and modifying gene expression patterns. For example, in bacteria, transposition can lead to conferring antibiotic resistance. Movement of transposable elements within the genetic pool of pathogenic bacteria can aid in transfer of antibiotic-resistant genetic elements. In eukaryotes, transposons can carry out...
15.4K
Chromatin Immunoprecipitation- ChIP
11.1K
Chromatin immunoprecipitation, or ChIP, is an antibody-based technique used to identify sites on DNA that bind to transcription factors of interest or histone proteins. It also helps determine the type of histone modifications such as acetylation, phosphorylation, or methylation.
Types of ChIP
ChIP can be divided into two types - X-ChIP and N-ChIP. X-ChIP involves in vivo cross-linking of histones and regulatory proteins to DNA, fragmenting the DNA by sonication, and isolating the protein-DNA...
Types of ChIP
ChIP can be divided into two types - X-ChIP and N-ChIP. X-ChIP involves in vivo cross-linking of histones and regulatory proteins to DNA, fragmenting the DNA by sonication, and isolating the protein-DNA...
11.1K
Non-LTR Retrotransposons
11.4K
As the name suggests, non-LTR retrotransposons lack the long terminal repeats characteristic of the LTR retrotransposons. Additionally, both LTR and non-LTR retrotransposons use distinct mechanisms of mobilization. Non-LTR retrotransposons are further divided into two classes - Long interspersed nuclear elements (LINEs) and short interspersed nuclear elements (SINEs), both of which occur abundantly in most mammals, including humans. Some of the active non-LTR retrotransposons in humans are L1...
11.4K


