在蝶中3D染色质结构的进化模式和功能影响,这些蝶经历了广泛的基因组重组
Botong Zhou1, Ping Hu2, Guichun Liu2
1School of Ecology and Environment, New Cornerstone Science Laboratory, Northwestern Polytechnical University, Xi'an, 710072, China.
Nature communications
|July 26, 2024
概括
蝶基因组分析揭示了染色体变化如何影响3D染色体结构和基因调节. 这些变化影响了诸如翅膀图案和宿主植物选择等特征,为昆虫进化提供了洞察力.
科学领域:
- 进化生物学是进化的生物学.
- 基因组学就是基因组学.
- 染色体生物学 染色体生物学
背景情况:
- 3D染色体架构影响基因调节,但其在昆虫中的进化仍然不太清楚.
- 染色体重排可以改变染色体结构和基因表达.
研究的目的:
- 为了研究蝶中3D染色质结构的进化模式.
- 了解染色体重组对基因调节和特征进化的影响.
主要方法:
- 四种蝶物种的染色体级基因组测序.
- 大规模的Hi-C数据分析.
- 在蝶中进行CRISPR-Cas9基因编辑.
主要成果:
- 染色体间的重新排列很少会破坏祖先的3D染色体结构.
- 染色体内部的重新排列改变了3D结构,导致新的拓关联域 (TAD) 和子TAD.
- 在蝶中发现了Hox基因集群 (ANT-C和BX-C) 之间的染色质环,与Drosophila不同.
- 这些循环中CTCF结合点的破坏影响了Antp调节的表型,导致无腿幼虫.
结论:
- 三维染色体结构通过染色体内重排进化,影响基因调节.
- 三维染色体结构的变化在蝶特征的进化中起着重要作用,包括翅膀图案和宿主植物特异性.
- 涉及霍克斯基因的新型染色体循环相互作用是蝶的一个关键进化创新.
相关概念视频
Position-effect Variegation
6.3K
In 1928, a German botanist Emil Heitz observed the moss nuclei with a DNA binding dye. He observed that while some chromatin regions decondense and spread out in the interphase nucleus, others do not. He termed them euchromatin and heterochromatin, respectively. He proposed that the heterochromatin regions reflect a functionally inactive state of the genome. It was later confirmed that heterochromatin is transcriptionally repressed, and euchromatin is transcriptionally active chromatin.
6.3K
Polytene Chromosomes
10.0K
Polytene chromosomes are giant interphase chromosomes with several DNA strands placed side by side. They were discovered in the year 1881 by Balbiani in salivary glands, intestine, muscles, malpighian tubules, and hypoderm of larvae Chironomus plumosus. Hence, these are also called "Salivary gland chromosomes." These are found in insects of the order Diptera and Collembola; in certain organs of mammals; and synergids, antipodes of flowering plants. Polytene chromosomes are also...
10.0K
Lampbrush Chromosomes
7.9K
In 1882, Flemming observed lampbrush chromosomes (LBC) in salamander eggs. Later in 1892, Rückert observed LBCs in shark egg cells and coined the term "lampbrush chromosomes" because they looked like brushes used to clean kerosene lamps.
LBCs are made up of two pairs of conjugating homologous chromatids. Each chromatid consists of alternatively positioned regions of condensed-inactive chromatin and loosely placed-active side loops, which can be contracted and extended. The loops...
LBCs are made up of two pairs of conjugating homologous chromatids. Each chromatid consists of alternatively positioned regions of condensed-inactive chromatin and loosely placed-active side loops, which can be contracted and extended. The loops...
7.9K
Inheritance of Chromatin Structures
6.2K
Epigenetics is the study of inherited changes in a cell's phenotype without changing the DNA sequences. It provides a form of memory for the differential gene expression pattern to maintain cell lineage, position-effect variegation, dosage compensation, and maintenance of chromatin structures such as telomeres and centromeres. For example, the structure and location of the centromere on chromosomes are epigenetically inherited. Its functionality is not dictated or ensured by the underlying...
6.2K
Chromatin Position Affects Gene Expression
23.3K
Chromatin is the massive complex of DNA and proteins packaged inside the nucleus. The complexity of chromatin folding and how it is packaged inside the nucleus greatly influences access to genetic information. Generally, the nucleus' periphery is considered transcriptionally repressive, while the cell's interior is considered a transcriptionally active area.
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the...
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the...
23.3K
Duplication of Chromatin Structure
5.4K
The process of chromosome duplication during cell division requires genome-wide disruption and re-assembly of chromatin. The chromatin structure must be accurately inherited, reassembled, and maintained in the daughter cells to ensure lineage propagation.
The basic unit of the chromatin is the nucleosome, consisting of DNA wrapped around octameric histone proteins and short stretches of linker DNA separating individual nucleosomes. The histone proteins within the nucleosome have their...
The basic unit of the chromatin is the nucleosome, consisting of DNA wrapped around octameric histone proteins and short stretches of linker DNA separating individual nucleosomes. The histone proteins within the nucleosome have their...
5.4K


