SARS-CoV-2基因组流行病学仪表板:对公共卫生响应的功能和技术框架的审查
Nikita Sitharam1, Houriiyah Tegally1, Danilo de Castro Silva1,2
1Centre for Epidemic Response and Innovation (CERI), School for Data Science and Computational Thinking, Stellenbosch University, Stellenbosch 7600, South Africa.
Genes
|July 27, 2024
概括
基因组流行病学仪表板可视化病原体数据,提高COVID-19等疫情期间的透明度. 本综述分析了六个SARS-CoV-2仪表板,根据公共卫生应用的类型和特征对它们进行分类.
科学领域:
- 公共卫生信息学 公共卫生信息学
- 基因组流行病学 基因组流行病学
- 数据可视化 数据可视化
背景情况:
- 随着COVID-19的流行,数据可视化工具的发展加速了.
- 基因组流行病学仪表板对于解释复杂的病原体监测数据至关重要.
- 这些仪表板旨在提高数据生产者和公共卫生利益相关者之间的透明度.
研究的目的:
- 对公开可用的SARS-CoV-2基因组流行病学仪表板进行范围审查.
- 分析所呈现的数据,功能和视觉特征以及这些仪表板的计算架构.
- 为了分类基因组流行病学仪表板的类型.
主要方法:
- 使用了范围审查方法.
- 六个公开可用的SARS-CoV-2基因组流行病学仪表板被选择用于分析.
- 基于数据源评估仪表板,呈现信息,功能和架构.
主要成果:
- 确定了三种主要类型的仪表板:遗传学,基因组监测和突变.
- 数据来源于各种数据库 (例如,GISAID,GenBank) 并根据特定的地理区域量身定制.
- 关键性能指标和可视化根据仪表板类型而异;计算架构以用户为中心.
结论:
- 基因组流行病学仪表板是强大的,适应性的公共卫生工具.
- 这些资源有助于理解和应对当前和未来的病原体爆发.
- 病原体基因组监测对全球卫生安全日益至关重要.
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