量化-交换质谱仪用于单一目标药物候选库的同时结构特征和亲和度索引
Esther Wolf1, Oleksandra Herasymenko2, Maria Kutera2,3,4
1Department of Chemistry, York University, Toronto, ON M3J 1P3, Canada.
Analytical chemistry
|July 29, 2024
概括
差异-交换质谱 (HDX-MS) 现在可以定量分析候选药物库. 这种方法可以准确地预测药物标结合亲和力 (KD) 并同时表征分子结构.
科学领域:
- 生物化学 生物化学
- 分析化学 分析化学
- 药物发现 药物发现 药物发现
背景情况:
- -交换质谱法 (HDX-MS) 是研究药物标相互作用的强大工具.
- 它在分析药物候选图书馆以确定亲和力的定量应用尚未得到充分研究.
研究的目的:
- 探索差异性HDX-MS (ΔHDX-MS) 的定量潜力,用于药物候选物库分析.
- 通过 ΔHDX-MS 验证和确定候选药物的亲和力.
主要方法:
- 使用ΔHDX-MS.对13种针对WDR5的小分子进行了表征.
- 对 ΔHDX-MS 数据与表面等离子共振 (SPR) 分离系数 (K D) 的比较.
- 对 ΔHDX-MS 数据进行三种信号对噪声 (S/N) 计算方法的探索.
主要成果:
- 定性分析确定了所有化合物的结合接口和全效应.
- ΔHDX-MS 信号与噪声比 (S/N) 有效地排列了相对亲和关系.
- ΔHDX-MS 准确地从从SPR数据中获得的校准曲线中预测了KD值.
结论:
- ΔHDX-MS提供了一种定量方法来验证和确定候选药物库的亲和力.
- 该技术同时提供有关药物标相互作用的结构信息.
- 这种方法通过有效的图书馆选和表征来促进药物开发.
相关概念视频
High-Resolution Mass Spectrometry (HRMS)
1.3K
The resolution of a mass spectrometer depends on the efficiency of separating ions with different ion masses. The mass of an atom is approximated to the sum of the masses of protons and neutrons inside, considering the masses of protons and neutrons as equal. However, the masses of the proton (1.6726 × 10−24 g) and neutron (1.6749 × 10−24 g) are not truly equal. There is a minor error in the expression of atomic masses relative to the simplest atom of hydrogen. For...
1.3K
¹³C NMR: Distortionless Enhancement by Polarization Transfer (DEPT)
1.0K
When proton-coupled carbon-13 spectra are simplified by a broadband proton decoupling technique, structural information about the coupled protons is lost. Distortionless enhancement by polarization transfer (DEPT) is a technique that provides information on the number of hydrogens attached to each carbon in a molecule. While the DEPT experiment utilizes complex pulse sequences, the pulse delay and flip angle are specifically manipulated. The resulting signals have different phases depending on...
1.0K
¹H NMR of Labile Protons: Deuterium (²H) Substitution
880
This lesson illustrates the role of deuterium substitution in simplifying the NMR spectrum of compounds comprising labile protons. One method employed is the use of deuterium. Amongst the three isotopes of hydrogen, deuterium (2H) has a nucleus composed of one proton and one neutron. When the D2O solvent is added to a pure dry ethanol solution, its labile proton is substituted with deuterium.
880
2D NMR: Heteronuclear Single-Quantum Correlation Spectroscopy (HSQC)
680
Heteronuclear single-quantum correlation spectroscopy (HSQC) is a 2D NMR technique that reveals one-bond correlations between hydrogen and a heteronucleus. The HSQC experiment is similar to the heteronuclear correlation experiment (HETCOR) but is more sensitive. In the HSQC spectrum, the proton chemical shift is plotted on the horizontal F2 axis, while the 13C chemical shift is plotted on the vertical F1 axis. The corresponding proton and 13C spectra are also shown. The HSQC contour plot does...
680


