多氨基-tRNA合成酶复合体的形成限制了乱伦的tRNA校对
Rylan R Watkins1, Anna Vradi1, Irina Shulgina1
1Department of Chemistry and Biochemistry, Center for RNA Biology, Ohio State University, Columbus, OH, United States.
Frontiers in microbiology
|July 31, 2024
概括
杆菌使用独特的脱糖酶来纠正蛋白质合成中的错误,特别是从proline tRNA中去除错误充电的氨酸. 这些发现揭示了对转化忠实性和潜在药物点的新见解.
科学领域:
- 分子生物学分子生物学
- 生物化学 生物化学
- 寄生虫学的寄生虫学
背景情况:
- 忠实的mRNA解码依赖于准确的氨基-tRNA合成酶 (ARS).
- 像Trypanosoma brucei这样的原生动物中的翻译忠实机制仍然不太了解.
- 由于代谢变化和prolyl-tRNA合成酶对氨酸的潜在失活,Trypanosoma brucei在翻译忠实性方面面临挑战.
研究的目的:
- 调查特定脱糖酶在维持Trypanosoma brucei的翻译忠实性中的作用.
- 描述Trypanosoma brucei prolyl-tRNA合成酶 (ProRS) 和相关的脱糖酶MCP3在纠正错误结合的tRNA中的活性.
- 探索这些酶作为人类非洲三虫病的药物点的潜力.
主要方法:
- 纯化Trypanosoma brucei ProRS和MCP3.3. 这两种类型的病毒.
- 在体外酶分析以测量脱活性.
- 尺寸排除色谱多角度光散射以确定MCP3的寡合化状态.
- 动力学测试以评估tRNA特异性和杂交性水解.
主要成果:
- 纯化的Tb ProRS和MCP3都在体外表现出强大的失误充电的Ala-tRNAPro的脱离.
- 在结合tRNA时,MCP3作为单体起作用,尽管其N端延伸促进了孤立的二分化.
- MCP3显示放松的tRNA特异性和散乱地水解Ala-tRNAAla,在多氨基酸-tRNA合成酶复合体内存在Tb-alanyl-tRNA合成酶时,活性减少.
结论:
- 在Trypanosoma brucei的校对和保持翻译忠实性方面,Tb ProRS和MCP3发挥着至关重要的作用.
- 多氨基-tRNA合成酶复杂环境调节了脱活动的特异性.
- 这些发现为开发针对Trypanosoma brucei的翻译忠实性的新疗法提供了基础.
相关概念视频
Improving Translational Accuracy
9.7K
Base complementarity between the three base pairs of mRNA codon and the tRNA anticodon is not a failsafe mechanism. Inaccuracies can range from a single mismatch to no correct base pairing at all. The free energy difference between the correct and nearly correct base pairs can be as small as 3 kcal/ mol. With complementarity being the only proofreading step, the estimated error frequency would be one wrong amino acid in every 100 amino acids incorporated. However, error frequencies observed in...
9.7K
tRNA Activation
19.2K
Aminoacyl-tRNA synthetases are present in both eukaryotes and bacteria. Though eukaryotes have 20 different aminoacyl-tRNA synthetases to couple to 20 amino acids, many bacteria do not have genes for all of these aminoacyl-tRNA synthetases. Despite this, they still use all 20 amino acids to synthesize their proteins. For instance, some bacteria do not have the gene encoding the enzyme that couples glutamine with its partner tRNA. In these organisms, one enzyme adds glutamic acid to all of the...
19.2K
Transfer RNA Synthesis
11.9K
One of the unique features of tRNA is the presence of modified bases. In some tRNAs, modified bases account for nearly 20% of the total bases in the molecule. Altogether, these unusual bases protect the tRNA from enzymatic degradation by RNases.
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
11.9K
RNA Editing
9.0K
RNA editing is a post-transcriptional modification where a precursor mRNA (pre-mRNA) nucleotide sequence is changed by base insertion, deletion, or modification. The extent of RNA editing varies from a few hundred bases, in mitochondrial DNA of trypanosomes, to a just single base, in nuclear genes of mammals. Even a single base change in the pre-mRNA can convert a codon for one amino acid into the codon for another amino acid or a stop codon. This type of re-coding can significantly affect the...
9.0K
Transcription Attenuation in Prokaryotes
15.2K
Transcriptional attenuation occurs when RNA transcription is prematurely terminated due to the formation of a terminator mRNA hairpin structure. Bacteria use these hairpins to regulate the transcription process and control the synthesis of several amino acids including histidine, lysine, threonine, and phenylalanine. Transcription attenuation takes place in the non-coding regions of mRNA.
There are several different mechanisms used to attenuate transcription. In ribosome mediated...
There are several different mechanisms used to attenuate transcription. In ribosome mediated...
15.2K
Proofreading
53.9K
Overview
53.9K


