调整设计者翻译器官的功能与正角tRNA合成酶/tRNA对
Mikhail E Sushkin1, Marius Jung2, Edward A Lemke3
1Biocenter, Johannes Gutenberg University Mainz, Hanns-Dieter-Hüsch-Weg 17, 55128 Mainz, Germany; International PhD Programme of the Institute of Molecular Biology (IMB) gGmbH, Hanns-Dieter-Hüsch-Weg 17, 55128 Mainz, Germany.
Journal of molecular biology
|August 1, 2024
概括
使用直角翻译器官 (OTOs) 扩展遗传密码可以实现特定站点的蛋白质工程. 一个新的仿真RS/tRNA对克服了局限性,允许ncAA在OTO中被纳入以增强蛋白质功能.
科学领域:
- 生物化学 生物化学
- 分子生物学分子生物学
- 合成生物学 合成生物学
背景情况:
- 遗传密码扩展 (GCE) 能够将非正规氨基酸 (ncAAs) 具体地纳入蛋白质中.
- 正向翻译器官 (OTOs) 为哺乳动物细胞中背景ncAA整合提供了一个解决方案.
- 目前的OTO应用仅限于单个tRNA合成酶/tRNA (RS/tRNA) 对的独家使用.
研究的目的:
- 为了探索额外的正交RS/tRNA对与GCE的OTO的兼容性.
- 开发一种新的RS/tRNA对,以便在OTO中有效和选择性地纳入ncAA.
- 确定设计器官中的酶功能的空间工程设计约束.
主要方法:
- 在OTO中测试四个已确定的正交RS/tRNA对的mRNA选择性GCE.
- 开发和实施一种新的仿真基inylalanyl-RS/tRNA对.
- 研究使用OTOs进行体内蛋白质工程的设计约束.
主要成果:
- 四种常用的RS/tRNA对未能在OTO中实现mRNA选择性GCE.
- 一种新型的仿真基基-RS/tRNA对成功地使OTO中特定于位点和蛋白质选择性ncAA的结合成为可能.
- 确定了设计器官内酶功能的空间工程中未计入的设计约束.
结论:
- 新的仿真RS/tRNA对的开发扩大了基于OTO的GCE的工具包.
- 这项研究提供了关于克服空间工程在细胞内应用的局限性的见解.
- 这些发现为使用设计器官的先进的体内蛋白质工程策略铺平了道路.
相关概念视频
tRNA Activation
19.2K
Aminoacyl-tRNA synthetases are present in both eukaryotes and bacteria. Though eukaryotes have 20 different aminoacyl-tRNA synthetases to couple to 20 amino acids, many bacteria do not have genes for all of these aminoacyl-tRNA synthetases. Despite this, they still use all 20 amino acids to synthesize their proteins. For instance, some bacteria do not have the gene encoding the enzyme that couples glutamine with its partner tRNA. In these organisms, one enzyme adds glutamic acid to all of the...
19.2K
Transfer RNA Synthesis
11.9K
One of the unique features of tRNA is the presence of modified bases. In some tRNAs, modified bases account for nearly 20% of the total bases in the molecule. Altogether, these unusual bases protect the tRNA from enzymatic degradation by RNases.
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
11.9K
Improving Translational Accuracy
9.7K
Base complementarity between the three base pairs of mRNA codon and the tRNA anticodon is not a failsafe mechanism. Inaccuracies can range from a single mismatch to no correct base pairing at all. The free energy difference between the correct and nearly correct base pairs can be as small as 3 kcal/ mol. With complementarity being the only proofreading step, the estimated error frequency would be one wrong amino acid in every 100 amino acids incorporated. However, error frequencies observed in...
9.7K
RNA Structure
4.7K
The basic structure of RNA consists of a string of ribonucleotides attached by phosphodiester bonds. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA) involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three...
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA) involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three...
4.7K
Termination of Translation
25.3K
The large ribosomal subunit has several important structures essential to translation. These include the peptidyl transferase center (PTC) - which is the site where the peptide bond is formed - and a large, internal, water-filled tube through which the nascent polypeptide moves. This latter structure is called the Peptide Exit Tunnel, and it begins at the PTC and spans the body of the large ribosomal subunit. During translation, as the nascent polypeptide chain is synthesized, it passes through...
25.3K
Ribosomal RNA Synthesis
13.2K
Ribosome synthesis is a highly complex and coordinated process involving more than 200 assembly factors. The synthesis and processing of ribosomal components occurs not only in the nucleolus but also in the nucleoplasm and the cytoplasm of eukaryotic cells.
Ribosome biogenesis begins with the synthesis of 5S and 45S pre-rRNAs by distinct RNA polymerases. The primary transcripts are extensively processed and modified before they are bound and folded by ribosomal proteins and assembly factors,...
Ribosome biogenesis begins with the synthesis of 5S and 45S pre-rRNAs by distinct RNA polymerases. The primary transcripts are extensively processed and modified before they are bound and folded by ribosomal proteins and assembly factors,...
13.2K


