翻译T盒子核糖开关通过调节构造灵活性来结合tRNA.
Eduardo Campos-Chavez1, Sneha Paul2,3, Zunwu Zhou2
1Department of Molecular Biosciences, Northwestern University, Evanston, IL, 60208, USA.
Nature communications
|August 3, 2024
概括
T-box 核糖开关调节细菌中的基因表达. 这项研究揭示了Mycobacterium tuberculosis IleS T-box riboswitch的两步结合机制,突出了其结构灵活性和特定的RNA相互作用.
科学领域:
- 分子生物学分子生物学
- 在RNA生物学,RNA生物学.
- 细菌遗传学 细菌遗传学
背景情况:
- T盒子核糖开关是格拉姆阳性细菌中关键的非编码RNA调节器.
- 它们通过感知tRNA氨基化状态来控制氨基酸代谢.
- 这种规定会影响相关基因的转录或翻译.
研究的目的:
- 通过使用单分子Förster共振能量转移 (smFRET) 来研究Mycobacterium结核病IleS T-box рибо开关的结合机制.
- 为了阐明转换T-盒子 рибо开关的动力学和形态动力学.
主要方法:
- 单分子弗斯特尔共振能量转移 (smFRET) 研究.
- 在T-盒子核糖开关中分析tRNA结合和构造变化.
主要成果:
- 一个两步绑定模型得到了支持,最初的tRNA反子识别,随后是NCCA序列相互作用.
- 暂时的tRNA对接到区分器域发生在反虫识别后,即使没有NCCA相互作用.
- NC_CA-区分器相互作用显著稳定了完全结合状态,这表明了NCCA识别的 conformational 选择模型.
结论:
- 翻译T-盒子核糖转换器具有显著的形状灵活性.
- 这些发现为理解基因调节中的RNA-蛋白结合特异性和亲和性提供了动力学框架.
- 这项工作加深了对细菌遗传调节机制的理解.
相关概念视频
Riboswitches
8.1K
Riboswitches are non-coding mRNA domains that regulate the transcription and translation of downstream genes without the help of proteins. Riboswitches bind directly to a metabolite and can form unique stem-loop or hairpin structures in response to the amount of the metabolite present. They have two distinct regions – a metabolite-binding aptamer and an expression platform.
The aptamer has high specificity for a particular metabolite which allows riboswitches to specifically regulate...
The aptamer has high specificity for a particular metabolite which allows riboswitches to specifically regulate...
8.1K
Types of RNA
63.4K
Overview
Three main types of RNA are involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). These RNAs perform diverse functions and can be broadly classified as protein-coding or non-coding RNA. Non-coding RNAs play important roles in the regulation of gene expression in response to developmental and environmental changes. Non-coding RNAs in prokaryotes can be manipulated to develop more effective antibacterial drugs for human or animal use.
RNA...
Three main types of RNA are involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). These RNAs perform diverse functions and can be broadly classified as protein-coding or non-coding RNA. Non-coding RNAs play important roles in the regulation of gene expression in response to developmental and environmental changes. Non-coding RNAs in prokaryotes can be manipulated to develop more effective antibacterial drugs for human or animal use.
RNA...
63.4K
RNA Structure
4.7K
The basic structure of RNA consists of a string of ribonucleotides attached by phosphodiester bonds. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA) involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three...
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA) involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three...
4.7K
Transfer RNA Synthesis
11.9K
One of the unique features of tRNA is the presence of modified bases. In some tRNAs, modified bases account for nearly 20% of the total bases in the molecule. Altogether, these unusual bases protect the tRNA from enzymatic degradation by RNases.
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
11.9K
Improving Translational Accuracy
9.6K
Base complementarity between the three base pairs of mRNA codon and the tRNA anticodon is not a failsafe mechanism. Inaccuracies can range from a single mismatch to no correct base pairing at all. The free energy difference between the correct and nearly correct base pairs can be as small as 3 kcal/ mol. With complementarity being the only proofreading step, the estimated error frequency would be one wrong amino acid in every 100 amino acids incorporated. However, error frequencies observed in...
9.6K
Nucleic Acids
44.0K
Nucleic acids are the most important macromolecules for the continuity of life. They carry the cell's genetic blueprint and carry instructions for its functioning.
DNA and RNA
The two main types of nucleic acids are deoxyribonucleic acid (DNA) and ribonucleic acid (RNA). DNA is the genetic material in all living organisms, ranging from single-celled bacteria to multicellular mammals. It is in the nucleus of eukaryotes and in the organelles, chloroplasts, and mitochondria. In prokaryotes,...
DNA and RNA
The two main types of nucleic acids are deoxyribonucleic acid (DNA) and ribonucleic acid (RNA). DNA is the genetic material in all living organisms, ranging from single-celled bacteria to multicellular mammals. It is in the nucleus of eukaryotes and in the organelles, chloroplasts, and mitochondria. In prokaryotes,...
44.0K


