素M1的晶体结构在通过铁素吸收系统的初始阶段显示出多样化的构造和相互作用
Nawee Jantarit1,2, Hideaki Tanaka1,2, Yuxi Lin3
1Protein Crystallography Laboratory, Institute for Protein Research, Osaka University, Suita, Japan.
FEBS open bio
|August 10, 2024
概括
素M1 (PM1),一种细菌素,使用独特的铁素域进入植物细胞. 这项研究揭示了它的结构,并提出了通过外膜转移的机制.
科学领域:
- 微生物学 微生物学
- 结构生物学 结构生物学
- 生物化学 生物化学
背景情况:
- 皮托细菌卡罗托沃鲁姆 (Pectobacterium carotovorum) 在植物中引起软腐烂.
- 素M1 (PM1) 是一种由P. carotovorum产生的细菌素.
- PM1具有独特的铁素域,可以与植物的铁素吸收系统相互作用.
研究的目的:
- 为了阐明PM1吸收到植物细胞的基于结构的机制.
- 为了确定全长PM1.1的X射线结构.
主要方法:
- 在2.04 Å分辨率的全长PM1的X射线晶体学.
- 整合已公布的FusA结构数据.
- 核磁共振 (NMR) 对PM1铁素域与FusA.相互作用的数据分析.
- 分子对接建模.分子对接建模.
主要成果:
- 确定了全长PM1的X射线结构,包括由螺旋连接的N端铁素和C端催化域.
- 我们生成了PM1铁素域与FusA的对接模型.
- 提出了一种涉及动态域重排的PM1转移机制.
结论:
- PM1利用其铁素域与植物铁素吸收系统 (FusA) 进行接触.
- 结构和建模数据为PM1的外膜转移机制提供了洞察力.
- 了解PM1吸收可能有助于制定抗击乳腺细菌媒介植物疾病的策略.
相关概念视频
Crystal Field Theory - Octahedral Complexes
26.3K
Crystal Field Theory
To explain the observed behavior of transition metal complexes (such as colors), a model involving electrostatic interactions between the electrons from the ligands and the electrons in the unhybridized d orbitals of the central metal atom has been developed. This electrostatic model is crystal field theory (CFT). It helps to understand, interpret, and predict the colors, magnetic behavior, and some structures of coordination compounds of transition metals.
CFT focuses on...
To explain the observed behavior of transition metal complexes (such as colors), a model involving electrostatic interactions between the electrons from the ligands and the electrons in the unhybridized d orbitals of the central metal atom has been developed. This electrostatic model is crystal field theory (CFT). It helps to understand, interpret, and predict the colors, magnetic behavior, and some structures of coordination compounds of transition metals.
CFT focuses on...
26.3K
Electron Transport Chain: Complex III and IV
7.3K
During the electron transport chain, electrons from NADH and FADH2 are first transferred to complexes I and II, respectively. These two complexes then transfer the electrons to ubiquinol, which carries them further to complex III. Complex III passes the electrons across the intermembrane space to Cyt c, which carries them further to complex IV. Complex IV donates electrons to oxygen and reduces it to water. As electrons pass through complexes I, III, and IV, the energy released aids the pumping...
7.3K
Electron Transport Chain: Complex I and II
12.5K
The mitochondrial electron transport chain (ETC) is the main energy generation system in the eukaryotic cells. However, mitochondria also produce cytotoxic reactive oxygen species (ROS) due to the large electron flow during oxidative phosphorylation. While Complex I is one of the primary sources of superoxide radicals, ROS production by Complex II is uncommon and may only be observed in cancer cells with mutated complexes.
ROS generation is regulated and maintained at moderate levels necessary...
ROS generation is regulated and maintained at moderate levels necessary...
12.5K
The Electron Transport Chain
16.4K
The electron transport chain or oxidative phosphorylation is an exothermic process in which free energy released during electron transfer reactions is coupled to ATP synthesis. This process is a significant source of energy in aerobic cells, and therefore inhibitors of the electron transport chain can be detrimental to the cell's metabolic processes.
Inhibitors of the electron transport chain
Rotenone, a widely used pesticide, prevents electron transfer from Fe-S cluster to ubiquinone or Q...
Inhibitors of the electron transport chain
Rotenone, a widely used pesticide, prevents electron transfer from Fe-S cluster to ubiquinone or Q...
16.4K
Crystal Field Theory - Tetrahedral and Square Planar Complexes
41.8K
Tetrahedral Complexes
Crystal field theory (CFT) is applicable to molecules in geometries other than octahedral. In octahedral complexes, the lobes of the dx2−y2 and dz2 orbitals point directly at the ligands. For tetrahedral complexes, the d orbitals remain in place, but with only four ligands located between the axes. None of the orbitals points directly at the tetrahedral ligands. However, the dx2−y2 and dz2 orbitals (along the Cartesian axes) overlap with the ligands less than the dxy,...
Crystal field theory (CFT) is applicable to molecules in geometries other than octahedral. In octahedral complexes, the lobes of the dx2−y2 and dz2 orbitals point directly at the ligands. For tetrahedral complexes, the d orbitals remain in place, but with only four ligands located between the axes. None of the orbitals points directly at the tetrahedral ligands. However, the dx2−y2 and dz2 orbitals (along the Cartesian axes) overlap with the ligands less than the dxy,...
41.8K
EDTA: Chemistry and Properties
1.8K
Polydentate ligands are most widely used in complexometric titrations because they form more stable complexes with the metal ions than mono- or bidentate ligands due to the chelate effect. Examples of polydentate ligands are ethylenediaminetetraacetic acid (EDTA), crown ethers, and cryptands. The most important feature of optimal polydentate ligands is the ability to form 1:1 complexes in a single-step process. Amino carboxylic acid derivatives are frequently used as complexing agents. EDTA is...
1.8K


