ncStem:在癌症干细胞中策划和预测的ncRNA的全面资源
Hui Liu1, Nan Zhang1, Yijie Jia1
1College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, Heilongjiang 150081, China.
Database : the journal of biological databases and curation
|August 13, 2024
概括
这项研究介绍了ncStem,这是一个与癌症干系相关的非编码RNA (ncRNA) 数据库. 它有助于研究癌症进展和潜在的治疗点.
科学领域:
- 在瘤学瘤学.
- 分子生物学分子生物学
- 生物信息学是一种生物信息学.
背景情况:
- 癌症干部驱动瘤的进展,转移和复发.
- 非编码RNAs (ncRNAs) 是癌症干细胞的关键调节者.
- 需要为癌症干性相关的ncRNA提供一个全面的资源.
研究的目的:
- 开发ncStem,一个手动策划和预测的ncRNAs参与癌症干系的数据库.
- 为检索和分析癌症干性相关的ncRNAs提供一个平台.
- 促进癌症干细胞性研究,并确定潜在的治疗点.
主要方法:
- 手动选经过实验验证的ncRNAs.
- 使用随机步行与重启 (RWR) 算法对ncRNAs的计算预测.
- 监管和共同表达网络的整合用于预测.
主要成果:
- ncStem包含645个经过实验验证的条目 (lncRNA,miRNA,circRNA).
- 数据库包括11132个预测的lncRNA和972个预测的miRNA用于33种TCGA癌症.
- 提供功能丰富,生存和细胞位置分析的工具.
结论:
- ncStem是癌症干细胞研究的宝贵资源.
- 该数据库可以帮助识别新的生物标志物和治疗点.
- 有助于理解ncRNA在癌症发病和进展中的作用.
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