跨细胞类型的翻译效率共变是哺乳动物转录组的保存组织原理
Yue Liu1, Shilpa Rao1, Ian Hoskins1
1Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA.
bioRxiv : the preprint server for biology
|August 16, 2024
概括
这项研究引入了翻译效率共变 (TEC),以揭示细胞间协调的基因翻译. TEC 证明了哺乳动物的保存模式,揭示了基因功能和蛋白质相互作用.
科学领域:
- 分子生物学分子生物学
- 基因组学就是基因组学.
- 系统生物学 系统生物学
背景情况:
- 基因表达协调在RNA水平上已知,有助于发现调节网络.
- 基因表达在翻译水平上的协调在很大程度上仍未被探索.
研究的目的:
- 为了调查协调基因表达是否延伸到翻译步骤.
- 引入和定义翻译效率共变 (TEC) 作为协调翻译的衡量标准.
- 探索转化共变的保护和功能影响.
主要方法:
- 统一分析了来自人类和小鼠的3819个核糖体分析数据集.
- 开发和应用翻译效率共变量 (TEC) 度量.
- 跨物种的比较分析和与蛋白质-蛋白质相互作用的相关性.
主要成果:
- 在人类和小鼠细胞中识别保存的翻译效率共变 (TEC) 模式.
- 经过TEC分析,发现了跨细胞类型和指定的调控机制之间的协调翻译.
- 物理相互作用的蛋白质在翻译和转录水平上显示出对正共变的显著丰富.
结论:
- 翻译共变是一种哺乳动物转录组中保存的组织原理.
- TEC为理解转化层面的基因调控提供了一个新的框架.
- 协调翻译有助于细胞蛋白质组的功能组织.
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