相关实验视频
Updated: Jun 16, 2025

12:17
Detection and Isolation of Apoptotic Bodies to High Purity
Published on: August 12, 2018
10.6K
人类细胞亡杂酶Xkr4的结构和功能
Sayan Chakraborty1, Zhang Feng1, Sangyun Lee1
1Department of Anesthesiology, Weill Cornell Medical College.
bioRxiv : the preprint server for biology
|August 16, 2024
概括
人类Xkr4蛋白质混杂脂质,这是细胞清除的关键过程. 这种蛋白质使细胞膜变薄,有助于其功能,并可能揭示活跃scramblases的一般机制.
科学领域:
- 细胞生物学 细胞生物学
- 分子机制的分子机制
- 膜动力学 膜动力学
背景情况:
- 胺在垂死细胞上的外部化信号表明巨细胞的识别和清除,由X-Kell相关 (Xkr) 蛋白质介导.
- 缺陷的Xkr介导混杂导致清除受损,随后导致炎症.
- 之前的模型提出Xkr4激活涉及酶裂变,二元化和带结合.
研究的目的:
- 研究人类Xkr4 (hXkr4) 脂质杂乱的分子机制.
- 阐明 hXkr4 活动的结构基础.
- 为了探索膜稀释在scramblase功能中的作用.
主要方法:
- 生物化学方法使用纯化的全长单体hXkr4.4.
- 电子显微镜 (CryoEM) 用于结构的确定.
- 分子动力学 (MD) 模拟来分析膜相互作用.
主要成果:
- 纯化单体hXkr4显示了脂质混杂活性.
- 化EM揭示了一种新的hXkr4形状,由酸性残留形成的电子阴性表面.
- MD模拟显示,这种构造会诱导膜薄化,与混杂效率相关.
结论:
- hXkr4 作为单体 scramblase 起作用,挑战了以前的激活模型.
- 电子负面和诱导的膜稀释是hXkr4编码机制的关键.
- 膜稀薄可能是活性脂质混杂酶的一般性质.
相关概念视频
Membrane Asymmetry Regulating Transporters
4.3K
Enzymes like flippase, floppase, and scramblase transfer phospholipids from one layer to another in the membrane, thereby affecting membrane asymmetry.
Flippase
Eukaryotic flippases are type-IV P-type ATPases or P4-ATPases belonging to P-type ATPase family proteins that are membrane-bound pumps involved in the ATP-mediated transport of ions and molecules across the membrane. Flippases flip specific phospholipids from the outer to the inner leaflet of a membrane. All P4-ATPases have one...
Flippase
Eukaryotic flippases are type-IV P-type ATPases or P4-ATPases belonging to P-type ATPase family proteins that are membrane-bound pumps involved in the ATP-mediated transport of ions and molecules across the membrane. Flippases flip specific phospholipids from the outer to the inner leaflet of a membrane. All P4-ATPases have one...
4.3K
The Extrinsic Apoptotic Pathway
6.3K
The extrinsic apoptotic pathway is initiated when extracellular death-inducing signals, such as specific cytokines, activate the death receptors expressed on the cell surface. The immune cells involved in this pathway are natural killer cells (NK cells) and cytotoxic T-lymphocytes. NK cells are critical in innate immune response, while cytotoxic T-lymphocytes are associated with adaptive immune response. These cells recognize specific receptors expressed on the altered cells and activate...
6.3K
The Intrinsic Apoptotic Pathway
6.4K
Internal cellular stress, such as cellular injury or hypoxia, triggers intrinsic apoptosis. The B-cell lymphoma 2 (Bcl-2) family of proteins are the primary regulators of the intrinsic apoptotic pathway. For example, during DNA damage, checkpoint proteins, such as Ataxia Telangiectasia Mutated (ATM protein) and Checkpoints Factor-2 (Chk2) proteins, are activated. These proteins phosphorylate p53 which further activates pro-apoptotic proteins, such as Bax, Bak, PUMA, and Noxa, and inhibits...
6.4K
Caspases
12.4K
Caspase, a family of cysteine proteases, serve as effectors in apoptosis. The ced3 gene in C.elegans was first identified to be involved in apoptosis. This gene encodes the ced-3 caspase that is similar to the interleukin-1-beta converting enzyme or ICE in mammals. In addition to apoptosis, caspases also function in the inflammatory response. Inflammatory caspases are essential in activating pro-inflammatory cytokines that recruit immune cells and block the replication of pathogens inside...
12.4K
Phagocytosis of Apoptotic Cells
3.7K
Cells undergoing apoptosis form apoptotic bodies that must be removed immediately to prevent inflammation, autoimmune diseases, and necrosis. Phagocytosis is carried out by professional phagocytes such as macrophages or immature dendritic cells. Non-professional phagocytes such as epithelial cells and fibroblasts also take part in this process; however, they are not as effective as professional phagocytes.
Normal cells contain receptors that prevent them from being recognized...
Normal cells contain receptors that prevent them from being recognized...
3.7K
Apoptosis
11.3K
Apoptosis is a combination of two Greek words, 'apo' and 'ptosis,' meaning separation and falling off, respectively. Hippocrates used this word to describe gangrene, which was caused due to bandaging of fractured bones. Apoptosis was distinguished from necrosis in 1970 when John Kerr reported observations of morphological changes occurring during apoptosis. During one experiment, he observed that the disruption of blood supply to the liver tissue resulted in a size...
11.3K

